Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

84673464 .. 84677151

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG615700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTTCGGCATCGACGTCAATGATCCTCAACATTTGGAAGACGCCAGTATGGAGAGAGACGGCCACCAGAACGTCAATGCAAGACTACGGAGCACAAGGGGGGAGAGTGCTCCACGGGGACATTCTATAATGATATTGCTGGCATTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTGGGCGTCTGCCTCCAACTCAAGTTTCCAGATGTGTCTACATATGCGACCGCCTACGGCACCGTGATGATGAACCTCATCATTATTGCGGCATGCTTTTACATCGTCTCTTTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTATGAAGATCTGATGAACAAAATTTGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCATCCTTATTTCACCATTCGGATGGATTGCCCTCTTCTTCTGGACCACCTACCTTTTATGCTTCGTGAGTAAGTCTTACCAGGGGCTGAAAAAACTCTACCAAAGTGCAGTTGCACAGCTTGTTCAAGACTTCGGAGAATTGAAACAGAAGTTGGTTGATTTGAATCGCCGCATGATGGGCAGTAATACAACTGCGGCACTTGATCGTGCCTATCAGACATTGAAGAACCTGATCATCAGGAATGAGGGGCGCATGACAGGGCATGAAGCCCAGAACACGAACCAGAACCAGAACAGCACCACTGAAGAACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

238

Amino Acids

26.65

Weight (kDa)

6.2

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	4 cut(s)	231, 269, 568, 593
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	3 cut(s)	18, 45, 186
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	4 cut(s)	524, 541, 562, 622
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 533, 565
AluBI	AGCT	2 cut(s)	314, 517
AluI	AGCT	2 cut(s)	314, 517
Alw21I	GWGCWC	2 cut(s)	98, 115
Alw26I	GTCTC	2 cut(s)	54, 292
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	98, 115
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	295, 414, 568
BceAI	ACGGC	2 cut(s)	79, 253
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	54, 292
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	4 cut(s)	270, 315, 568, 594
BlsI	GCNGC	4 cut(s)	271, 316, 569, 595
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	185
BsaBI	GATNNNNATC	2 cut(s)	305, 561
BsaHI	GRCGYC	3 cut(s)	18, 45, 186
BsaJI	CCNNGG	2 cut(s)	116, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	146
Bse8I	GATNNNNATC	2 cut(s)	305, 561
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	116, 478
BseGI	GGATG	2 cut(s)	399, 425
BseJI	GATNNNNATC	2 cut(s)	305, 561
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	98, 115
BslFI	GGGAC	2 cut(s)	135, 364
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	2 cut(s)	54, 292
BsmBI	CGTCTC	2 cut(s)	54, 292
BsmFI	GGGAC	2 cut(s)	135, 364
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	98, 115
Bsp143I	GATC	4 cut(s)	25, 340, 601, 630
BspACI	CCGC	4 cut(s)	231, 269, 568, 593
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	116, 478
BssMI	GATC	4 cut(s)	25, 340, 601, 630
BssNI	GRCGYC	3 cut(s)	18, 45, 186
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	3 cut(s)	18, 45, 186
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	4 cut(s)	144, 153, 274, 319
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	399, 425
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	4 cut(s)	28, 343, 604, 633
BstMAI	GTCTC	2 cut(s)	54, 292
BstMBI	GATC	4 cut(s)	25, 340, 601, 630
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 152, 576
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	155, 276
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	399, 425
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	4 cut(s)	144, 153, 274, 319
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	441
CseI	GACGC	2 cut(s)	53, 175
CviAII	CATG	6 cut(s)	152, 160, 273, 571, 652, 662
CviJI	RGCY	5 cut(s)	66, 314, 484, 517, 668
CviKI_1	RGCY	5 cut(s)	66, 314, 484, 517, 668
DpnI	GATC	4 cut(s)	27, 342, 603, 632
DpnII	GATC	4 cut(s)	25, 340, 601, 630
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	157
Esp3I	CGTCTC	2 cut(s)	54, 292
FaeI	CATG	6 cut(s)	155, 163, 276, 574, 655, 665
FaqI	GGGAC	2 cut(s)	135, 364
FatI	CATG	6 cut(s)	151, 159, 272, 570, 651, 661
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	4 cut(s)	270, 315, 568, 594
FokI	GGATG	2 cut(s)	386, 432
Fsp4HI	GCNGC	4 cut(s)	270, 315, 568, 594
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	4 cut(s)	270, 315, 568, 594
HaeIII	GGCC	1 cut(s)	66
HgaI	GACGC	2 cut(s)	53, 175
HhaI	GCGC	1 cut(s)	651
Hin1I	GRCGYC	3 cut(s)	18, 45, 186
Hin1II	CATG	6 cut(s)	155, 163, 276, 574, 655, 665
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HinfI	GANTC	3 cut(s)	177, 306, 562
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	5 cut(s)	176, 345, 419, 533, 615
Hpy188III	TCNNGA	5 cut(s)	209, 439, 463, 524, 637
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	18, 75
HpyCH4V	TGCA	5 cut(s)	83, 151, 155, 506, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 152, 576
HpySE526I	ACGT	2 cut(s)	18, 75
Hsp92I	GRCGYC	3 cut(s)	18, 45, 186
Hsp92II	CATG	6 cut(s)	155, 163, 276, 574, 655, 665
HspAI	GCGC	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	4 cut(s)	25, 340, 601, 630
LmnI	GCTCC	2 cut(s)	93, 118
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	18, 75
MalI	GATC	4 cut(s)	27, 342, 603, 632
MboI	GATC	4 cut(s)	25, 340, 601, 630
MboII	GAAGA	6 cut(s)	53, 350, 424, 427, 634, 716
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	98, 115
MluCI	AATT	2 cut(s)	354, 536
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	39, 203, 266, 371, 440, 637
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	715
MslI	CAYNNNNRTG	2 cut(s)	245, 418
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	148, 152, 576
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	4 cut(s)	25, 340, 601, 630
NlaIII	CATG	6 cut(s)	155, 163, 276, 574, 655, 665
NlaIV	GGNNCC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	2 cut(s)	155, 276
PaeI	GCATGC	2 cut(s)	155, 276
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	306, 562
PkrI	GCNGC	4 cut(s)	271, 316, 569, 595
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	245, 418
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	4 cut(s)	270, 315, 568, 594
Sau3AI	GATC	4 cut(s)	25, 340, 601, 630
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	2 cut(s)	98, 115
SetI	ASST	9 cut(s)	21, 78, 258, 316, 449, 453, 519, 630, 712
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	245, 418
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	2 cut(s)	155, 276
Sse9I	AATT	2 cut(s)	354, 536
SsiI	CCGC	4 cut(s)	231, 269, 568, 593
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	21, 78
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	354, 536
TauI	GCSGC	3 cut(s)	272, 570, 596
TfiI	GAWTC	2 cut(s)	306, 562
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	5 cut(s)	148, 266, 351, 362, 678
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	2 cut(s)	155, 276
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.