Rmu_sc0008490.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008490.1
OG0000247
Physical Location & Seq
Forward (+)
97521 .. 99675
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008490.1_g000023.1.cds

Sequence Viewer

Length: 1122 bp
atgggcattttcgggtggctactccaactgaagtacacatctgctagtgcatctccattcgtcaccgactatgtcaccatgctgatgtttatcgttgctttctttgtttactttgggtccttgactgtgaagctattagcccgtgctcccagttcagacatgggagagttcatcaacaacattaacttcttgttcggaactctggcctctgttttgctactgcttatccttgtccgagctttcgggttgtttgccctcctcttgtggacaatttatcttgtgagggaagttgcaactaagaagtcgtacaggaatgcagtttgtgatgtcttcaacaaaataaaagagatgattaatggtcactcggtggagattaatgaagggagcagacagattgtaaacccagatctcatcccaaaatcccaattcggctggagacccaagaacttgccttcgcgtcgttcctttccgccgccgacaaaaacatctcgctcaagatggatttgtaaaatgggtcaggagatttgcatcaggaacgaagccctaactagggctggactcgggtcggttttgcaatgtcaaggactgaacccggaaccgaaaccgataactgattttcggttcgggtttgatgttttttgtatgaagaaccgatgcagaaccgaaccgaccattatcgggtcggttcctcggtttttcggttccattccagatcggtctcattctcggtttttcggttccaaactcggatcggttccaagttcggttcctcggttttccggttccattccagatcggttccattatcggtttttcggttccaaattcggatcggttccaagttcggttcctcggttttccggttccattccagatcggttccattatcggtttttcggttccaaattcggatcggttccaagttcggttcctcggttttccggttccattccagatcggttccattatcggtttttcggttccaaattcggatcggttccaagttcggttcctcggttttccggttccattccagatcggttccattatcggtttttcggttccaaattcggatcggttccaagttcggcgtcgtctgaaagaactgataaatttgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

41.98

Weight (kDa)

10.41

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 457
AciI CCGC 2 cut(s) 470, 473
AclWI GGATC 5 cut(s) 757, 838, 919, 1000, 1081
AcsI RAATTY 5 cut(s) 824, 905, 986, 1067, 1112
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 1091
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 2 cut(s) 35, 308
AfiI CCNNNNNNNGG 3 cut(s) 549, 550, 678
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 2 cut(s) 133, 239
AluI AGCT 2 cut(s) 133, 239
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 430, 723
AlwI GGATC 5 cut(s) 757, 838, 919, 1000, 1081
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 5 cut(s) 824, 905, 986, 1067, 1112
AseI ATTAAT 2 cut(s) 354, 375
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 55, 67
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 492
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 430, 723
BfaI CTAG 2 cut(s) 45, 549
BglII AGATCT 1 cut(s) 406
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 593
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 3 cut(s) 59, 537, 644
BmuI ACTGGG 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 1 cut(s) 593
BsaBI GATNNNNATC 2 cut(s) 89, 527
BsaHI GRCGYC 1 cut(s) 1091
BsaI GGTCTC 2 cut(s) 430, 723
BsaJI CCNNGG 5 cut(s) 689, 770, 851, 932, 1013
BsaWI WCCGGW 4 cut(s) 779, 860, 941, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 549, 550, 678
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 581
Bse8I GATNNNNATC 2 cut(s) 89, 527
BseDI CCNNGG 5 cut(s) 689, 770, 851, 932, 1013
BseGI GGATG 1 cut(s) 411
BseJI GATNNNNATC 2 cut(s) 89, 527
BseLI CCNNNNNNNGG 3 cut(s) 549, 550, 678
BseMI GCAATG 1 cut(s) 581
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 5 cut(s) 593, 780, 861, 942, 1023
BslI CCNNNNNNNGG 3 cut(s) 549, 550, 678
BsmAI GTCTC 2 cut(s) 430, 723
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 206
Bso31I GGTCTC 2 cut(s) 430, 723
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 148
BspACI CCGC 2 cut(s) 470, 473
BspANI GGCC 1 cut(s) 206
BspFNI CGCG 1 cut(s) 457
BspPI GGATC 5 cut(s) 757, 838, 919, 1000, 1081
BspTNI GGTCTC 2 cut(s) 430, 723
BsrDI GCAATG 1 cut(s) 581
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 5 cut(s) 689, 770, 851, 932, 1013
BssNI GRCGYC 1 cut(s) 1091
Bst4CI ACNGT 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 1091
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 457
BstMAI GTCTC 2 cut(s) 430, 723
BstPAI GACNNNNGTC 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 591
BstUI CGCG 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 2 cut(s) 446, 1080
Csp6I GTAC 2 cut(s) 34, 307
CviAII CATG 3 cut(s) 79, 160, 1119
CviJI RGCY 8 cut(s) 19, 133, 140, 206, 239, 432, 542, 554
CviKI_1 RGCY 8 cut(s) 19, 133, 140, 206, 239, 432, 542, 554
CviQI GTAC 2 cut(s) 34, 307
DdeI CTNAG 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 367
EciI GGCGGA 1 cut(s) 459
Eco31I GGTCTC 2 cut(s) 430, 723
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 117
FaeI CATG 3 cut(s) 82, 163, 1122
FaiI YATR 5 cut(s) 72, 80, 161, 644, 1120
FatI CATG 3 cut(s) 78, 159, 1118
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 2 cut(s) 45, 549
GluI GCNGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 1 cut(s) 206
HapII CCGG 5 cut(s) 593, 780, 861, 942, 1023
HgaI GACGC 2 cut(s) 446, 1080
Hin1I GRCGYC 1 cut(s) 1091
Hin1II CATG 3 cut(s) 82, 163, 1122
HinfI GANTC 1 cut(s) 558
HpaII CCGG 5 cut(s) 593, 780, 861, 942, 1023
HphI GGTGA 2 cut(s) 55, 67
Hpy166II GTNNAC 4 cut(s) 36, 109, 267, 400
Hpy188I TCNGA 9 cut(s) 157, 197, 236, 749, 830, 911, 992, 1073, 1099
Hpy188III TCNNGA 8 cut(s) 495, 518, 532, 710, 791, 872, 953, 1034
Hpy8I GTNNAC 4 cut(s) 36, 109, 267, 400
Hpy99I CGWCG 2 cut(s) 462, 1096
HpyAV CCTTC 2 cut(s) 374, 462
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 50, 293, 317, 528, 574, 657, 1118
HpyF3I CTNAG 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 1091
Hsp92II CATG 3 cut(s) 82, 163, 1122
LmnI GCTCC 2 cut(s) 151, 384
LweI GCATC 3 cut(s) 59, 537, 644
MaeI CTAG 2 cut(s) 45, 549
MaeIII GTNAC 3 cut(s) 61, 73, 359
MboII GAAGA 2 cut(s) 322, 658
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 7 cut(s) 270, 425, 824, 905, 986, 1067, 1112
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 9 cut(s) 217, 266, 269, 276, 699, 780, 861, 942, 1023
MseI TTAA 3 cut(s) 183, 354, 375
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 5 cut(s) 593, 780, 861, 942, 1023
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 319
MvnI CGCG 1 cut(s) 457
NciI CCSGG 1 cut(s) 593
NlaIII CATG 3 cut(s) 82, 163, 1122
NmuCI GTSAC 3 cut(s) 61, 73, 359
PctI GAATGC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 474
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PpuMI RGGWCCY 1 cut(s) 117
PshAI GACNNNNGTC 1 cut(s) 562
PshBI ATTAAT 2 cut(s) 354, 375
Psp5II RGGWCCY 1 cut(s) 117
PspPI GGNCC 1 cut(s) 117
PspPPI RGGWCCY 1 cut(s) 117
PsuI RGATCY 1 cut(s) 406
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 2 cut(s) 35, 308
RsaNI GTAC 2 cut(s) 34, 307
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 3 cut(s) 183, 354, 375
SatI GCNGC 1 cut(s) 473
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 148
SetI ASST 2 cut(s) 135, 241
SfaNI GCATC 3 cut(s) 59, 537, 644
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 7 cut(s) 270, 425, 824, 905, 986, 1067, 1112
SsiI CCGC 2 cut(s) 470, 473
SspMI CTAG 2 cut(s) 45, 549
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 127
TaqII GACCGA 1 cut(s) 705
TasI AATT 7 cut(s) 270, 425, 824, 905, 986, 1067, 1112
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 475
Tru1I TTAA 3 cut(s) 183, 354, 375
Tru9I TTAA 3 cut(s) 183, 354, 375
TseFI GTSAC 3 cut(s) 61, 73, 359
Tsp45I GTSAC 3 cut(s) 61, 73, 359
TspDTI ATGAA 3 cut(s) 160, 393, 659
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 2 cut(s) 354, 375
XapI RAATTY 5 cut(s) 824, 905, 986, 1067, 1112
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 2 cut(s) 45, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.