Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

45901043 .. 45902178

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGAGTGCCGGCCACCAGAATGCCAACGCAAGACTAGGGAGCACAAGGGGCGAGAGTGCTCCACAGGGACATTCTATAATGATATTGCTGGCACTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTAGGCGTCTACCTCCAACTCAAGTTTCCGAATGTGTCTACATATGCGACCGCCTACGGCACTGTGATGATGGACCTCATCATTATTGAGACATGCTTTTACATAGTCTCTTTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTTCGAAGATCTGATGAACAATATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCGTCCTTATTTCACCTTTCGGATGGATCGCACTCTTCGTATGGAGCATCTGCCTTTTATGCTTCCTGAGTAAGTCTTGCCGGTCTCTGAACACACTCTACCAAAGTGCAGTAGCACATCTTGTTCAGGACTTTGGAGAATTGAAAGAGAAGCTGGTTGATCTGAATCGCCGCTTGATGGACAGTAACGCAATTGCAGCACTTCATGGTCCCTATCAGACATTGAAGGACCTGATTATCAGGAATGACGGGCGCATGACAGAGCATGAAGCCCAGATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

209

Amino Acids

23.15

Weight (kDa)

5.82

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	138, 167
AciI	CCGC	2 cut(s)	180, 517
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	490, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	2 cut(s)	263, 499
AluI	AGCT	2 cut(s)	263, 499
Alw21I	GWGCWC	2 cut(s)	47, 64
Alw26I	GTCTC	3 cut(s)	212, 241, 435
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	263, 542
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	3 cut(s)	202, 554, 574
AsuHPI	GGTGA	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	285
AvaII	GGWCC	3 cut(s)	202, 554, 574
Bbv12I	GWGCWC	2 cut(s)	47, 64
BbvI	GCAGC	2 cut(s)	250, 554
BccI	CCATC	4 cut(s)	193, 244, 363, 517
BceAI	ACGGC	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	212, 241, 435
BfaI	CTAG	3 cut(s)	38, 260, 628
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	264, 517, 543
BlsI	GCNGC	3 cut(s)	265, 518, 544
Bme18I	GGWCC	3 cut(s)	202, 554, 574
BmgT120I	GGNCC	3 cut(s)	202, 554, 574
BmiI	GGNNCC	1 cut(s)	556
BmsI	GCATC	2 cut(s)	402, 612
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	2 cut(s)	254, 510
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	2 cut(s)	11, 426
Bse8I	GATNNNNATC	2 cut(s)	254, 510
BseGI	GGATG	1 cut(s)	374
BseJI	GATNNNNATC	2 cut(s)	254, 510
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	250, 554
BsgI	GTGCAG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	47, 64
BsiSI	CCGG	2 cut(s)	12, 427
BslFI	GGGAC	3 cut(s)	84, 313, 540
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	3 cut(s)	212, 241, 435
BsmFI	GGGAC	3 cut(s)	84, 313, 540
BsmI	GAATGC	2 cut(s)	28, 104
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	47, 64
Bsp143I	GATC	3 cut(s)	289, 372, 505
BspACI	CCGC	2 cut(s)	180, 517
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	285
BspTNI	GGTCTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	11, 426
BssAI	RCCGGY	2 cut(s)	11, 426
BssMI	GATC	3 cut(s)	289, 372, 505
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	193, 530
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	4 cut(s)	13, 93, 102, 268
BstDEI	CTNAG	2 cut(s)	130, 413
BstF5I	GGATG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	3 cut(s)	292, 375, 508
BstMAI	GTCTC	3 cut(s)	212, 241, 435
BstMBI	GATC	3 cut(s)	289, 372, 505
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 97, 101, 405, 542
BstNSI	RCATGY	2 cut(s)	104, 225
BstV1I	GCAGC	2 cut(s)	250, 554
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 189
Cac8I	GCNNGC	4 cut(s)	13, 93, 102, 268
CfoI	GCGC	1 cut(s)	600
Cfr10I	RCCGGY	2 cut(s)	11, 426
Cfr13I	GGNCC	3 cut(s)	202, 554, 574
CseI	GACGC	1 cut(s)	124
CviAII	CATG	6 cut(s)	101, 109, 222, 551, 601, 611
CviJI	RGCY	5 cut(s)	15, 263, 309, 499, 617
CviKI_1	RGCY	5 cut(s)	15, 263, 309, 499, 617
DdeI	CTNAG	2 cut(s)	130, 413
DpnI	GATC	3 cut(s)	291, 374, 507
DpnII	GATC	3 cut(s)	289, 372, 505
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	3 cut(s)	202, 554, 574
EcoO109I	RGGNCCY	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	106
FaeI	CATG	6 cut(s)	104, 112, 225, 554, 604, 614
FaqI	GGGAC	3 cut(s)	84, 313, 540
FatI	CATG	6 cut(s)	100, 108, 221, 550, 600, 610
FauNDI	CATATG	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	138, 167
Fnu4HI	GCNGC	3 cut(s)	264, 517, 543
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	3 cut(s)	264, 517, 543
FspBI	CTAG	3 cut(s)	38, 260, 628
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	3 cut(s)	264, 517, 543
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	12, 427
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	104, 112, 225, 554, 604, 614
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	126, 255, 511
HpaII	CCGG	2 cut(s)	12, 427
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	139, 168
Hpy188I	TCNGA	7 cut(s)	125, 159, 294, 368, 435, 510, 564
Hpy188III	TCNNGA	3 cut(s)	412, 473, 586
Hpy8I	GTNNAC	2 cut(s)	139, 168
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	193, 530
HpyCH4V	TGCA	4 cut(s)	100, 104, 455, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 97, 101, 405, 542
HpyF3I	CTNAG	2 cut(s)	130, 413
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	104, 112, 225, 554, 604, 614
HspAI	GCGC	1 cut(s)	598
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	289, 372, 505
LmnI	GCTCC	3 cut(s)	42, 67, 390
Lsp1109I	GCAGC	2 cut(s)	250, 554
LweI	GCATC	2 cut(s)	402, 612
MaeI	CTAG	3 cut(s)	38, 260, 628
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	291, 374, 507
MboI	GATC	3 cut(s)	289, 372, 505
MboII	GAAGA	2 cut(s)	299, 373
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	47, 64
MluCI	AATT	2 cut(s)	485, 537
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	152, 215, 320
Mph1103I	ATGCAT	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	11
MslI	CAYNNNNRTG	2 cut(s)	21, 194
MspI	CCGG	2 cut(s)	12, 427
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	2 cut(s)	28, 104
MwoI	GCNNNNNNNGC	5 cut(s)	51, 97, 101, 405, 542
NaeI	GCCGGC	1 cut(s)	13
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	3 cut(s)	289, 372, 505
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	6 cut(s)	104, 112, 225, 554, 604, 614
NlaIV	GGNNCC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	2 cut(s)	104, 225
NspV	TTCGAA	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	2 cut(s)	28, 104
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	255, 511
PkrI	GCNGC	3 cut(s)	265, 518, 544
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	3 cut(s)	202, 554, 574
PspPPI	RGGWCCY	1 cut(s)	574
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	21, 194
SatI	GCNGC	3 cut(s)	264, 517, 543
Sau3AI	GATC	3 cut(s)	289, 372, 505
Sau96I	GGNCC	3 cut(s)	202, 554, 574
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	47, 64
SetI	ASST	6 cut(s)	144, 207, 265, 364, 501, 579
SfaNI	GCATC	2 cut(s)	402, 612
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	3 cut(s)	202, 554, 574
SmiMI	CAYNNNNRTG	2 cut(s)	21, 194
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	2 cut(s)	485, 537
SsiI	CCGC	2 cut(s)	180, 517
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	38, 260, 628
TaaI	ACNGT	2 cut(s)	193, 530
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	485, 537
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	255, 511
TscAI	CASTG	2 cut(s)	102, 196
TseI	GCWGC	2 cut(s)	263, 542
TspDTI	ATGAA	4 cut(s)	97, 311, 539, 627
TspRI	CASTG	2 cut(s)	102, 196
VpaK11BI	GGWCC	3 cut(s)	202, 554, 574
XceI	RCATGY	2 cut(s)	104, 225
XmiI	GTMKAC	2 cut(s)	138, 167
XspI	CTAG	3 cut(s)	38, 260, 628
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.