Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

86419834 .. 86420424

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG641300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGGAGTTTGCAAATTGGAGAAGTTCTATAATTGAATTGCACAAATACATTTTCTATCTAATAACAATTTTAGGCTTTTGCCTCCCACTGAACTTCGCGAATGTGTCTCCATTTGTGCTGGACTACGGAGATACTATACTATTGAGGCTATTTATTATTGACACATTGGCTTACTGTGGATCACTTGGTGTCATGATACTCCAAACTGATCACACTAACATAGACTTTGGAGAATTCATGAATAGGATTAGCCTCTTTTTGGGAACTCTTGCTTCTATTTTAGAGTTGCTCATCCTATTTCCATCTTTTGGATGGCTCGCACTCTTCTTCTGGAGCATCTGCTTCGTTACCTTTGTGATTAAGTCATATCAATACTCGAAAACACTATGTGAAAGGGCAATTGCAGCTCTTGTTGTAACATTGGGTGAATTCCAAGAGAACCTGATAGCAATGAATGGCCGCTTGATGGGAAGTAGTGCAGTTGCAGGACTCGGTCGTGCTTATGAGAAATTGAAGGATCTGATCAAGAGGAGCCGCTATTCGACAGAGCATGAAACCAAGGAACAGAGCAAGGAGCTACCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

196

Amino Acids

22.34

Weight (kDa)

5.63

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	463, 538
AclWI	GGATC	2 cut(s)	190, 528
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	236, 431
AdeI	CACNNNGTG	2 cut(s)	191, 392
AfiI	CCNNNNNNNGG	3 cut(s)	262, 311, 469
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	38, 517
AluBI	AGCT	2 cut(s)	410, 580
AluI	AGCT	2 cut(s)	410, 580
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	190, 528
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	236, 431
AsiGI	ACCGGT	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	309, 313, 463
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BclI	TGATCA	2 cut(s)	211, 525
BcoDI	GTCTC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	408, 463, 538
BlsI	GCNGC	3 cut(s)	409, 464, 539
BmiI	GGNNCC	1 cut(s)	536
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 311, 469
Bse118I	RCCGGY	1 cut(s)	583
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	294, 320
BseLI	CCNNNNNNNGG	3 cut(s)	262, 311, 469
BseMI	GCAATG	1 cut(s)	459
BseRI	GAGGAG	2 cut(s)	20, 547
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	262, 311, 469
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	182, 211, 520, 525
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	2 cut(s)	463, 538
BspANI	GGCC	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	2 cut(s)	195, 240
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	190, 528
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	182, 211, 520, 525
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	294, 320
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	4 cut(s)	185, 214, 523, 528
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	182, 211, 520, 525
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	294, 320
BtsIMutI	CAGTG	1 cut(s)	89
BtuMI	TCGCGA	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	2 cut(s)	195, 240
Cfr10I	RCCGGY	1 cut(s)	583
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	3 cut(s)	196, 241, 554
CviJI	RGCY	9 cut(s)	78, 151, 173, 255, 319, 410, 462, 537, 580
CviKI_1	RGCY	9 cut(s)	78, 151, 173, 255, 319, 410, 462, 537, 580
DpnI	GATC	4 cut(s)	184, 213, 522, 527
DpnII	GATC	4 cut(s)	182, 211, 520, 525
DraIII	CACNNNGTG	2 cut(s)	191, 392
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	561
EcoRI	GAATTC	2 cut(s)	236, 431
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	199, 244, 557
FaiI	YATR	9 cut(s)	32, 140, 197, 224, 242, 370, 391, 507, 555
FatI	CATG	3 cut(s)	195, 240, 553
FbaI	TGATCA	2 cut(s)	211, 525
Fnu4HI	GCNGC	3 cut(s)	408, 463, 538
FokI	GGATG	2 cut(s)	281, 327
Fsp4HI	GCNGC	3 cut(s)	408, 463, 538
GluI	GCNGC	3 cut(s)	408, 463, 538
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	1 cut(s)	584
Hin1II	CATG	3 cut(s)	199, 244, 557
HinfI	GANTC	1 cut(s)	492
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	440
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	5 cut(s)	100, 196, 241, 334, 529
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	14, 43, 407, 482, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	199, 244, 557
Ksp22I	TGATCA	2 cut(s)	211, 525
Kzo9I	GATC	4 cut(s)	182, 211, 520, 525
LmnI	GCTCC	3 cut(s)	336, 534, 577
LpnPI	CCDG	4 cut(s)	107, 319, 458, 474
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	349, 418
MalI	GATC	4 cut(s)	184, 213, 522, 527
MboI	GATC	4 cut(s)	182, 211, 520, 525
MboII	GAAGA	2 cut(s)	319, 322
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	8 cut(s)	16, 33, 38, 69, 236, 402, 431, 512
MlyI	GAGTC	1 cut(s)	486
MnlI	CCTC	4 cut(s)	95, 141, 266, 525
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	584
MunI	CAATTG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	4 cut(s)	182, 211, 520, 525
NlaIII	CATG	3 cut(s)	199, 244, 557
NlaIV	GGNNCC	1 cut(s)	536
NruI	TCGCGA	1 cut(s)	101
PagI	TCATGA	2 cut(s)	195, 240
PflFI	GACNNNGTC	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	409, 464, 539
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	495
RruI	TCGCGA	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	408, 463, 538
Sau3AI	GATC	4 cut(s)	182, 211, 520, 525
SchI	GAGTC	1 cut(s)	486
SetI	ASST	4 cut(s)	356, 412, 447, 582
SfaNI	GCATC	1 cut(s)	348
Sse9I	AATT	8 cut(s)	16, 33, 38, 69, 236, 402, 431, 512
SsiI	CCGC	2 cut(s)	463, 538
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	380, 545
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	8 cut(s)	16, 33, 38, 69, 236, 402, 431, 512
TauI	GCSGC	2 cut(s)	465, 540
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	229, 257, 470, 570
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	311
XapI	RAATTY	2 cut(s)	236, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.