Rmu_sc0002322.1_g000037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002322.1
OG0000247
Physical Location & Seq
Reverse (-)
195983 .. 200661
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002322.1_g000037.1.cds

Sequence Viewer

Length: 1290 bp
atgggtgttctaggctggctcctccaactgaaatacgtaacagcgagtgcttccccgtttgtgacacactatgttactatgctgatgtttattgtcgttttcattgtttactttggggcattgactgctaaaatattctcccaagctcctaactcggatatggctgagttcatgaccaacattactctcttgtccggaactcttgcctcgattctactattgcacatcctcgttcgagcttttgggtgtttcgctctcctcttgtgggcgatttatcttgttagggacgttgtaactaagaaatcatatagaaaggcactcgttcatgtcttcgacaaagtgaaagtgctgatttatggcccctcagaggagagtaatgctgtgcaacccccaccaattgcagaggtcgcggtaccaatacaagatgccggacaacacaatgtagaagaaagaaaaatggagcagcgtaatgggaaacagcctcttactacaccgctgcccaaatcctttagccagccggttaggattgccaccgtgcccgccgacacctcctctgaagccagagccactgtccatatttcatcttccctgattgtccatagatcggacccctctaagcagcaccgatcgtcctcaatcgcacccagaaatgaggagaaagaacctagacttccttcctccatcaaccaatctagggctgggatcggttctgttttgacagttcaagtagtggaaccaagaccaaaaccgagttgtaattttaggttcgggtttggtgtttttcagtttaagaaccgagatggaactgaaccgatcataaacggtggaaaacctgatttttttcggaaggacgaaattttctcaaaattgcaatttggtcccccaaactctccgttctctctcctccctacgcggccgaaccgctcgacccgacccggaaatatctccggcctccggcgtcctccggccccggacccggcccttcctacactcggatcgagacgcccagccgcctggtgccaccggcttgctccgccgctgcccccagacgcggatcgaagaagccccaggtgtgcgaaacccgacccggccggaaaacctattttccggcatcacctcggcagatccttctcgatttggaaacgtctcctcctgctgatcatccccatatcctccttacatcacgatttgaagtgtagagcaaaagatcaagcgttgaagattgacggctctgatttgatctggaaacgtgatcagacggccaagatggattcaaacttccaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

47.7

Weight (kDa)

10.14

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 412, 1017
AccBSI CCGCTC 1 cut(s) 924
AccII CGCG 3 cut(s) 410, 913, 1052
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 9 cut(s) 410, 494, 540, 913, 922, 1011, 1034, 1037, 1052
AclWI GGATC 4 cut(s) 710, 1003, 1062, 1119
AcoI YGGCCR 3 cut(s) 914, 1089, 1260
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 1 cut(s) 576
AcyI GRCGYC 2 cut(s) 958, 1003
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 8 cut(s) 265, 367, 604, 694, 954, 976, 992, 1051
AgsI TTSAA 4 cut(s) 725, 1192, 1219, 1275
AjnI CCWGG 2 cut(s) 1013, 1067
AluBI AGCT 3 cut(s) 146, 239, 1286
AluI AGCT 3 cut(s) 146, 239, 1286
Alw26I GTCTC 2 cut(s) 994, 1151
AlwI GGATC 4 cut(s) 710, 1003, 1062, 1119
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 7 cut(s) 358, 914, 949, 966, 978, 1089, 1260
ApeKI GCWGC 4 cut(s) 463, 496, 619, 1039
ApoI RAATTY 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 412
AspS9I GGNCC 6 cut(s) 359, 607, 878, 967, 973, 979
AsuC2I CCSGG 4 cut(s) 936, 971, 977, 1088
AsuHPI GGTGA 1 cut(s) 1106
AvaII GGWCC 3 cut(s) 607, 878, 973
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 2 cut(s) 412, 1017
BbsI GAAGAC 1 cut(s) 322
BbvI GCAGC 4 cut(s) 475, 483, 631, 1026
BccI CCATC 3 cut(s) 689, 794, 1261
BceAI ACGGC 2 cut(s) 1243, 1275
BciT130I CCWGG 2 cut(s) 1015, 1069
BclI TGATCA 2 cut(s) 1158, 1252
BcnI CCSGG 4 cut(s) 936, 971, 977, 1088
BcoDI GTCTC 2 cut(s) 994, 1151
BfaI CTAG 3 cut(s) 11, 666, 693
BisI GCNGC 7 cut(s) 464, 497, 620, 914, 1011, 1037, 1040
BlsI GCNGC 7 cut(s) 465, 498, 621, 915, 1012, 1038, 1041
Bme1390I CCNGG 6 cut(s) 936, 971, 977, 1015, 1069, 1088
Bme18I GGWCC 3 cut(s) 607, 878, 973
BmgT120I GGNCC 6 cut(s) 359, 607, 878, 967, 973, 979
BmiI GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 880, 969, 975, 1019
BmrFI CCNGG 6 cut(s) 936, 971, 977, 1015, 1069, 1088
BmsI GCATC 2 cut(s) 415, 1120
BpiI GAAGAC 1 cut(s) 322
BpuMI CCSGG 4 cut(s) 936, 971, 977, 1088
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 958, 1003
BsaJI CCNNGG 3 cut(s) 969, 1067, 1117
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 8 cut(s) 265, 367, 604, 694, 954, 976, 992, 1051
Bse118I RCCGGY 2 cut(s) 517, 1023
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 2 cut(s) 1015, 1069
BseDI CCNNGG 3 cut(s) 969, 1067, 1117
BseGI GGATG 2 cut(s) 225, 1161
BseLI CCNNNNNNNGG 8 cut(s) 265, 367, 604, 694, 954, 976, 992, 1051
BseMII CTCAG 2 cut(s) 156, 378
BseRI GAGGAG 7 cut(s) 11, 248, 383, 541, 668, 893, 1139
BseSI GKGCMC 1 cut(s) 540
BseX3I CGGCCG 2 cut(s) 914, 1089
BseXI GCAGC 4 cut(s) 475, 483, 631, 1026
BseYI CCCAGC 2 cut(s) 698, 1006
Bsh1236I CGCG 3 cut(s) 410, 913, 1052
Bsh1285I CGRYCG 3 cut(s) 629, 917, 1092
BshFI GGCC 7 cut(s) 360, 916, 951, 968, 980, 1091, 1262
BshNI GGYRCC 2 cut(s) 412, 1017
BsiEI CGRYCG 3 cut(s) 629, 917, 1092
BslFI GGGAC 2 cut(s) 299, 864
BslI CCNNNNNNNGG 8 cut(s) 265, 367, 604, 694, 954, 976, 992, 1051
BsmAI GTCTC 2 cut(s) 994, 1151
BsmBI CGTCTC 2 cut(s) 994, 1151
BsmFI GGGAC 2 cut(s) 299, 864
BsnI GGCC 7 cut(s) 360, 916, 951, 968, 980, 1091, 1262
Bsp1286I GDGCHC 1 cut(s) 540
Bsp13I TCCGGA 1 cut(s) 194
BspACI CCGC 9 cut(s) 410, 494, 540, 913, 922, 1011, 1034, 1037, 1052
BspANI GGCC 7 cut(s) 360, 916, 951, 968, 980, 1091, 1262
BspCNI CTCAG 2 cut(s) 157, 377
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 3 cut(s) 410, 913, 1052
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 880, 969, 975, 1019
BspPI GGATC 4 cut(s) 710, 1003, 1062, 1119
BspT107I GGYRCC 2 cut(s) 412, 1017
BsrBI CCGCTC 1 cut(s) 924
BsrFI RCCGGY 2 cut(s) 517, 1023
BssAI RCCGGY 2 cut(s) 517, 1023
BssECI CCNNGG 3 cut(s) 969, 1067, 1117
BssNI GRCGYC 2 cut(s) 958, 1003
Bst2UI CCWGG 2 cut(s) 1015, 1069
Bst4CI ACNGT 4 cut(s) 535, 571, 721, 824
BstACI GRCGYC 2 cut(s) 958, 1003
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 4 cut(s) 17, 515, 540, 1029
BstDEI CTNAG 4 cut(s) 165, 297, 364, 615
BstF5I GGATG 2 cut(s) 225, 1161
BstFNI CGCG 3 cut(s) 410, 913, 1052
BstMAI GTCTC 2 cut(s) 994, 1151
BstMCI CGRYCG 3 cut(s) 629, 917, 1092
BstMWI GCNNNNNNNGC 3 cut(s) 125, 407, 1033
BstNI CCWGG 2 cut(s) 1015, 1069
BstSCI CCNGG 6 cut(s) 934, 969, 975, 1013, 1067, 1086
BstSLI GKGCMC 1 cut(s) 540
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 3 cut(s) 410, 913, 1052
BstV1I GCAGC 4 cut(s) 475, 483, 631, 1026
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 1124
BstXI CCANNNNNNTGG 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 1124
BstZI CGGCCG 2 cut(s) 914, 1089
BsuRI GGCC 7 cut(s) 360, 916, 951, 968, 980, 1091, 1262
BtsCI GGATG 2 cut(s) 225, 1161
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 4 cut(s) 17, 515, 540, 1029
CciI TCATGA 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 517, 1023
Cfr13I GGNCC 6 cut(s) 359, 607, 878, 967, 973, 979
CseI GACGC 3 cut(s) 947, 1011, 1058
Csp6I GTAC 1 cut(s) 413
CviAII CATG 2 cut(s) 172, 326
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 4 cut(s) 165, 297, 364, 615
EaeI YGGCCR 3 cut(s) 914, 1089, 1260
EagI CGGCCG 2 cut(s) 914, 1089
EciI GGCGGA 1 cut(s) 1023
EclXI CGGCCG 2 cut(s) 914, 1089
Eco105I TACGTA 1 cut(s) 37
Eco47I GGWCC 3 cut(s) 607, 878, 973
Eco52I CGGCCG 2 cut(s) 914, 1089
Eco57I CTGAAG 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 1013, 1067
Esp3I CGTCTC 2 cut(s) 994, 1151
FaeI CATG 2 cut(s) 175, 329
FaqI GGGAC 2 cut(s) 299, 864
FatI CATG 2 cut(s) 171, 325
FauI CCCGC 1 cut(s) 547
FbaI TGATCA 2 cut(s) 1158, 1252
Fnu4HI GCNGC 7 cut(s) 464, 497, 620, 914, 1011, 1037, 1040
FokI GGATG 2 cut(s) 212, 1148
Fsp4HI GCNGC 7 cut(s) 464, 497, 620, 914, 1011, 1037, 1040
FspBI CTAG 3 cut(s) 11, 666, 693
GluI GCNGC 7 cut(s) 464, 497, 620, 914, 1011, 1037, 1040
GsaI CCCAGC 2 cut(s) 702, 1010
HaeIII GGCC 7 cut(s) 360, 916, 951, 968, 980, 1091, 1262
HgaI GACGC 3 cut(s) 947, 1011, 1058
Hin1I GRCGYC 2 cut(s) 958, 1003
Hin1II CATG 2 cut(s) 175, 329
HindIII AAGCTT 1 cut(s) 1284
HinfI GANTC 2 cut(s) 211, 1271
HphI GGTGA 1 cut(s) 1106
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 8 cut(s) 157, 367, 556, 607, 846, 995, 1234, 1257
Hpy188III TCNNGA 6 cut(s) 172, 195, 999, 1132, 1184, 1243
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 684, 841, 992, 1138
HpyCH4III ACNGT 4 cut(s) 535, 571, 721, 824
HpyCH4IV ACGT 4 cut(s) 36, 288, 1144, 1249
HpyCH4V TGCA 4 cut(s) 223, 385, 401, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 407, 1033
HpyF3I CTNAG 4 cut(s) 165, 297, 364, 615
HpySE526I ACGT 4 cut(s) 36, 288, 1144, 1249
Hsp92I GRCGYC 2 cut(s) 958, 1003
Hsp92II CATG 2 cut(s) 175, 329
Kpn2I TCCGGA 1 cut(s) 194
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 2 cut(s) 1158, 1252
LmnI GCTCC 4 cut(s) 24, 151, 460, 1036
Lsp1109I GCAGC 4 cut(s) 475, 483, 631, 1026
LweI GCATC 2 cut(s) 415, 1120
MaeI CTAG 3 cut(s) 11, 666, 693
MaeII ACGT 4 cut(s) 36, 288, 1144, 1249
MaeIII GTNAC 4 cut(s) 37, 61, 73, 292
MbiI CCGCTC 1 cut(s) 924
MboII GAAGA 5 cut(s) 322, 458, 576, 1071, 1231
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 1124
MhlI GDGCHC 1 cut(s) 540
MluCI AATT 5 cut(s) 396, 757, 855, 866, 872
MmeI TCCRAC 1 cut(s) 49
MroI TCCGGA 1 cut(s) 194
MseI TTAA 1 cut(s) 789
MspA1I CMGCKG 2 cut(s) 496, 1039
MspR9I CCNGG 6 cut(s) 936, 971, 977, 1015, 1069, 1088
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 2 cut(s) 1015, 1069
MvnI CGCG 3 cut(s) 410, 913, 1052
MwoI GCNNNNNNNGC 3 cut(s) 125, 407, 1033
NciI CCSGG 4 cut(s) 936, 971, 977, 1088
NlaIII CATG 2 cut(s) 175, 329
NlaIV GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 880, 969, 975, 1019
NmeAIII GCCGAG 1 cut(s) 1098
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 171
PfeI GAWTC 2 cut(s) 211, 1271
PkrI GCNGC 7 cut(s) 465, 498, 621, 915, 1012, 1038, 1041
Ple19I CGATCG 1 cut(s) 629
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 1013, 1067
PspFI CCCAGC 2 cut(s) 698, 1006
PspGI CCWGG 2 cut(s) 1013, 1067
PspN4I GGNNCC 9 cut(s) 20, 361, 414, 609, 735, 880, 969, 975, 1019
PspPI GGNCC 6 cut(s) 359, 607, 878, 967, 973, 979
PsuI RGATCY 1 cut(s) 1124
PvuI CGATCG 1 cut(s) 629
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 7 cut(s) 464, 497, 620, 914, 1011, 1037, 1040
Sau96I GGNCC 6 cut(s) 359, 607, 878, 967, 973, 979
ScrFI CCNGG 6 cut(s) 936, 971, 977, 1015, 1069, 1088
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 2 cut(s) 415, 1120
SinI GGWCC 3 cut(s) 607, 878, 973
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 5 cut(s) 396, 757, 855, 866, 872
SsiI CCGC 9 cut(s) 410, 494, 540, 913, 922, 1011, 1034, 1037, 1052
SspI AATATT 1 cut(s) 135
SspMI CTAG 3 cut(s) 11, 666, 693
StyD4I CCNGG 6 cut(s) 934, 969, 975, 1013, 1067, 1086
TaaI ACNGT 4 cut(s) 535, 571, 721, 824
TaiI ACGT 4 cut(s) 39, 291, 1147, 1252
TaqI TCGA 7 cut(s) 209, 235, 333, 926, 998, 1057, 1133
TasI AATT 5 cut(s) 396, 757, 855, 866, 872
TauI GCSGC 3 cut(s) 916, 1013, 1039
TfiI GAWTC 2 cut(s) 211, 1271
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 463, 496, 619, 1039
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 91, 160, 314, 570
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 1 cut(s) 574
VpaK11BI GGWCC 3 cut(s) 607, 878, 973
XapI RAATTY 1 cut(s) 855
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XspI CTAG 3 cut(s) 11, 666, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.