Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

60400820 .. 60402096

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGAGAGCCGGCCACCAGAATACCAATGAAGGACTCAGCACAAGGTGGGAGACTGCTCCACAGGGACATTCTATAATGATATTGCTGGCATTGCATGGATTCATGTTTTCTCTCATCGGAGTCCTAGGCGTCTGCCTGCAACTCAAGTTTCCAGATGTGTCTACATATGCGACCGCCTACGGCACTGTGATGATGGACCTCATCATTATTGAGACATGCTTTTACATCGTCTCTTTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAACACAGATTCTGAAGATCTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTTTAGAGTTGCTCATCCTTATTTCACCTTTCGGATGGATTGCACTCTTCGTCTGGATCATCTGCCTTTTATGCTTCCTCATTAAGTCTTGCCAGTCTCTGAACACACTCCACCAAAGTGCAGTTGCACATCTTGTTCATGAATTTAGAGAACTGAGACAGAAGCTGGATGATTTGAAACACCGCTTGATGGAGAGTAATGCAATTGCAGAGAGTAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

5.74

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	2 cut(s)	177, 514
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	2 cut(s)	260, 496
AluI	AGCT	2 cut(s)	260, 496
Alw26I	GTCTC	5 cut(s)	47, 209, 238, 432, 481
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	3 cut(s)	281, 430, 496
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	473
AspA2I	CCTAGG	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	199
AvrII	CCTAGG	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	4 cut(s)	190, 241, 360, 514
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	5 cut(s)	47, 209, 238, 432, 481
BfaI	CTAG	2 cut(s)	128, 257
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	1 cut(s)	261
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	345, 371, 505
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	52, 476
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	471
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	81, 310
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	5 cut(s)	47, 209, 238, 432, 481
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	81, 310
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	286, 387
BspACI	CCGC	2 cut(s)	177, 514
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	51, 477
BspHI	TCATGA	1 cut(s)	469
BspPI	GGATC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	286, 387
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	13, 90, 140, 265
BstDEI	CTNAG	2 cut(s)	38, 485
BstF5I	GGATG	3 cut(s)	345, 371, 505
BstKTI	GATC	2 cut(s)	289, 390
BstMAI	GTCTC	5 cut(s)	47, 209, 238, 432, 481
BstMBI	GATC	2 cut(s)	286, 387
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 402
BstNSI	RCATGY	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	345, 371, 505
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	4 cut(s)	13, 90, 140, 265
CaiI	CAGNNNCTG	3 cut(s)	281, 430, 496
CciI	TCATGA	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	1 cut(s)	121
CviAII	CATG	5 cut(s)	98, 106, 219, 470, 552
CviJI	RGCY	5 cut(s)	11, 15, 260, 306, 496
CviKI_1	RGCY	5 cut(s)	11, 15, 260, 306, 496
DdeI	CTNAG	2 cut(s)	38, 485
DpnI	GATC	2 cut(s)	288, 389
DpnII	GATC	2 cut(s)	286, 387
DraIII	CACNNNGTG	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	5 cut(s)	101, 109, 222, 473, 555
FaiI	YATR	9 cut(s)	77, 99, 107, 169, 171, 220, 403, 471, 553
FaqI	GGGAC	2 cut(s)	81, 310
FatI	CATG	5 cut(s)	97, 105, 218, 469, 551
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	332, 378, 512
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	128, 257
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	101, 109, 222, 473, 555
HinfI	GANTC	5 cut(s)	36, 102, 123, 252, 278
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	5 cut(s)	122, 283, 291, 365, 432
Hpy188III	TCNNGA	3 cut(s)	155, 385, 470
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	8 cut(s)	97, 142, 374, 452, 458, 533, 539, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 402
HpyF3I	CTNAG	2 cut(s)	38, 485
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	101, 109, 222, 473, 555
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	286, 387
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	128, 257
MalI	GATC	2 cut(s)	288, 389
MboI	GATC	2 cut(s)	286, 387
MboII	GAAGA	2 cut(s)	296, 370
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	3 cut(s)	300, 473, 534
MlyI	GAGTC	2 cut(s)	30, 132
MnlI	CCTC	3 cut(s)	212, 317, 419
Mph1103I	ATGCAT	1 cut(s)	553
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	191, 447
MspI	CCGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	94, 402
NaeI	GCCGGC	1 cut(s)	13
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	286, 387
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	101, 109, 222, 473, 555
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	447
PagI	TCATGA	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	102, 252, 278
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	30, 131
PpsI	GAGTC	2 cut(s)	30, 131
PspPI	GGNCC	1 cut(s)	199
PstNI	CAGNNNCTG	3 cut(s)	281, 430, 496
PsuI	RGATCY	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	191, 447
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	286, 387
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	30, 132
SetI	ASST	5 cut(s)	50, 204, 262, 361, 498
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	191, 447
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	300, 473, 534
SsiI	CCGC	2 cut(s)	177, 514
SspMI	CTAG	2 cut(s)	128, 257
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	3 cut(s)	300, 473, 534
TfiI	GAWTC	3 cut(s)	102, 252, 278
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	5 cut(s)	45, 94, 308, 458, 486
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	2 cut(s)	128, 257
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.