Rh2AG591700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000247
Physical Location & Seq
Reverse (-)
82283092 .. 82285045
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG591700.1

Sequence Viewer

Length: 591 bp
ATGGCAGGAGCAGACAATACTACTCCCAGTTCACAAGGGTGCAGGGAGGAGGTTCAGAGTTCTCAAGGGGCGTTGCACCAATATAATTTTACTCTCCTCGCCATGCTAGGAATTCTCCTTCAAGTGAAGCAGGCAACCGGGAGTAAATCTCCATTTGTCACAGACCACGTTACAATGCTGACCTTTGTTGCCGTTTTCTTGATCTATATCTGGTCCTTGGCAACTTACAAGTTATGTCACTTTCCCACCACAGATTTGGCCGATTTCATGGACAACATTAGCCTCTTATTTGGATCACTTGCTCCGATCTTACTACTGCTTGTCCTCGTTCAAGCTTTCGGGTTGTTCACCCTCGGTTTGTGGATCCTGTACTTTCTTAGAGACTTTCTAACTAAGAAATCATACAGAAGGGCACTTGTTTATGTCTTGAAAAAAGTGCAAGAGCTGTTTAAAGGCCAAGAACAAAATGAGGCAGAGAATATTGTAGGATTACAAGAAGCAGGAGAGGAGAGTGCTGTACAAATACAAGAAGCAAGAGAACGGAACGTTGATGAAAACAAAATGGAGGAGCTGCAGAATGGACTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.03

Weight (kDa)

5.07

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 546
AclWI GGATC 3 cut(s) 301, 358, 371
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 371, 519
AgsI TTSAA 3 cut(s) 122, 332, 430
AleI CACNNNNGTG 1 cut(s) 37
AluBI AGCT 3 cut(s) 335, 445, 571
AluI AGCT 3 cut(s) 335, 445, 571
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 3 cut(s) 301, 358, 371
AoxI GGCC 2 cut(s) 258, 454
ApeKI GCWGC 1 cut(s) 571
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 415
BamHI GGATCC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 558
BceAI ACGGC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 572
BisI GCNGC 1 cut(s) 572
BlsI GCNGC 1 cut(s) 573
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 133, 165
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 216, 352
Bse1I ACTGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 216, 352
BseJI GATNNNNATC 1 cut(s) 206
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 4 cut(s) 62, 86, 521, 581
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 558
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 2 cut(s) 260, 456
BsiSI CCGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 375
BsnI GGCC 2 cut(s) 260, 456
Bsp1286I GDGCHC 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 4 cut(s) 201, 293, 306, 363
BspANI GGCC 2 cut(s) 260, 456
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 3 cut(s) 301, 358, 371
BsrGI TGTACA 1 cut(s) 517
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 216, 352
BssMI GATC 4 cut(s) 201, 293, 306, 363
BssT1I CCWWGG 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 377, 393
BstKTI GATC 4 cut(s) 204, 296, 309, 366
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 4 cut(s) 201, 293, 306, 363
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 572
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 363
BsuRI GGCC 2 cut(s) 260, 456
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 370, 518
CviAII CATG 2 cut(s) 103, 268
CviJI RGCY 6 cut(s) 260, 282, 335, 445, 456, 571
CviKI_1 RGCY 6 cut(s) 260, 282, 335, 445, 456, 571
CviQI GTAC 2 cut(s) 370, 518
DdeI CTNAG 2 cut(s) 377, 393
DpnI GATC 4 cut(s) 203, 295, 308, 365
DpnII GATC 4 cut(s) 201, 293, 306, 363
DraI TTTAAA 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 106, 271
FaiI YATR 7 cut(s) 84, 104, 207, 235, 269, 403, 423
FatI CATG 2 cut(s) 102, 267
Fnu4HI GCNGC 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 572
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 572
HaeIII GGCC 2 cut(s) 260, 456
HapII CCGG 1 cut(s) 138
Hin1II CATG 2 cut(s) 106, 271
HindIII AAGCTT 1 cut(s) 333
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 32, 348
Hpy188I TCNGA 2 cut(s) 57, 306
Hpy188III TCNNGA 2 cut(s) 199, 427
Hpy8I GTNNAC 2 cut(s) 32, 348
HpyAV CCTTC 2 cut(s) 128, 402
HpyCH4IV ACGT 2 cut(s) 168, 546
HpyCH4V TGCA 4 cut(s) 42, 76, 439, 574
HpyF3I CTNAG 2 cut(s) 377, 393
HpySE526I ACGT 2 cut(s) 168, 546
Hsp92II CATG 2 cut(s) 106, 271
Kzo9I GATC 4 cut(s) 201, 293, 306, 363
LmnI GCTCC 3 cut(s) 8, 307, 568
LpnPI CCDG 7 cut(s) 28, 40, 116, 151, 196, 380, 486
Lsp1109I GCAGC 1 cut(s) 558
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 168, 546
MaeIII GTNAC 3 cut(s) 157, 169, 236
MalI GATC 4 cut(s) 203, 295, 308, 365
MboI GATC 4 cut(s) 201, 293, 306, 363
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 2 cut(s) 85, 111
MnlI CCTC 9 cut(s) 40, 43, 107, 293, 335, 362, 463, 499, 559
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 139
NciI CCSGG 1 cut(s) 139
NdeII GATC 4 cut(s) 201, 293, 306, 363
NlaIII CATG 2 cut(s) 106, 271
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 157, 236
OliI CACNNNNGTG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 576
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 2 cut(s) 371, 519
RsaNI GTAC 2 cut(s) 370, 518
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 1 cut(s) 572
Sau3AI GATC 4 cut(s) 201, 293, 306, 363
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 415
SetI ASST 7 cut(s) 54, 171, 185, 337, 447, 549, 573
SfcI CTRYAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 2 cut(s) 85, 111
SspI AATATT 1 cut(s) 481
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 2 cut(s) 171, 549
TasI AATT 2 cut(s) 85, 111
TatI WGTACW 2 cut(s) 369, 517
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TseFI GTSAC 2 cut(s) 157, 236
TseI GCWGC 1 cut(s) 571
Tsp45I GTSAC 2 cut(s) 157, 236
TspDTI ATGAA 2 cut(s) 256, 567
TspGWI ACGGA 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.