Rh2AG592200

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
82307349 .. 82307861
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG592200.1

Sequence Viewer

Length: 513 bp
ATGGTCATAACAACGGAATGTGCAGTTCTCAACAGTACCACAGGGGCATTACACGGTTGCATTGTTTCTCTCATCACCATCTTGGGATTTTGCCTCCCACTCAAGTTTGCAAATGCTTCACCATTTGAGACAAACTACGACAGTATGCTGATGACTCTGTTTATTATGGACTCAGTCATTTACTTTGGGAGTTTAGCTTTCATGATAATCCAAGTCGCCCGCAACAATGCAGATATCGGAGAGTTCATGAACAAGATTAGCCTCTTGTTTGGAAGTCTTGCCTTTGTTTTAGAATTGCTCATCCTAGTTCAACCTTTTGGATGGATCGTGCTCTTCATCTGGAGCATTTGTTTTCTGAGGGTTGTGACTAACTCGTACCAATTGTTGAAAACACTCTATGGAAGTGCAATTGCAGGTCTTCATCATCGCTCCCGCGAATTGAAACAGAAATTGATTGAACTGGGTGACCACTCGATTCTAAGTAATGCATTTCTAGTACTTGCTCGTTTGTAA

Protein Analysis

170

Amino Acids

18.93

Weight (kDa)

6.88

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AccII CGCG 1 cut(s) 435
AciI CCGC 2 cut(s) 220, 433
AclWI GGATC 1 cut(s) 332
AfaI GTAC 3 cut(s) 37, 377, 498
AgsI TTSAA 4 cut(s) 311, 388, 442, 458
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 67, 111, 476
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 2 cut(s) 86, 315
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 305, 494
BfuAI ACCTGC 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 498
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 410
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse1I ACTGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 300, 326
BseMII CTCAG 2 cut(s) 186, 347
BseNI ACTGG 1 cut(s) 465
BsgI GTGCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 2 cut(s) 220, 433
BspCNI CTCAG 2 cut(s) 185, 348
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 2 cut(s) 201, 246
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 465
BssMI GATC 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 35, 56, 143
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 172, 356, 479
BstEII GGTNACC 1 cut(s) 464
BstF5I GGATG 2 cut(s) 300, 326
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 464
BstUI CGCG 1 cut(s) 435
BstV2I GAAGAC 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 410
BtsCI GGATG 2 cut(s) 300, 326
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 2 cut(s) 201, 246
Csp6I GTAC 3 cut(s) 36, 376, 497
CviAII CATG 2 cut(s) 202, 247
CviJI RGCY 2 cut(s) 197, 261
CviKI_1 RGCY 2 cut(s) 197, 261
CviQI GTAC 3 cut(s) 36, 376, 497
DdeI CTNAG 3 cut(s) 172, 356, 479
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 464
EcoRV GATATC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 490
FaeI CATG 2 cut(s) 205, 250
FaiI YATR 6 cut(s) 8, 146, 167, 203, 248, 399
FatI CATG 2 cut(s) 201, 246
FauI CCCGC 2 cut(s) 227, 440
FokI GGATG 2 cut(s) 287, 333
FspBI CTAG 2 cut(s) 305, 494
GsuI CTGGAG 1 cut(s) 361
Hin1II CATG 2 cut(s) 205, 250
HinfI GANTC 3 cut(s) 154, 170, 475
HphI GGTGA 3 cut(s) 67, 111, 476
Hpy188I TCNGA 2 cut(s) 239, 357
Hpy188III TCNNGA 3 cut(s) 202, 247, 340
HpyCH4III ACNGT 3 cut(s) 35, 56, 143
HpyCH4V TGCA 7 cut(s) 23, 60, 110, 230, 407, 413, 488
HpyF3I CTNAG 3 cut(s) 172, 356, 479
Hsp92II CATG 2 cut(s) 205, 250
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 2 cut(s) 342, 434
LpnPI CCDG 4 cut(s) 27, 325, 399, 446
MaeI CTAG 2 cut(s) 305, 494
MaeIII GTNAC 2 cut(s) 364, 464
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 2 cut(s) 325, 410
MfeI CAATTG 2 cut(s) 380, 408
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 293, 380, 408, 437, 449
MlyI GAGTC 2 cut(s) 148, 164
MnlI CCTC 3 cut(s) 104, 272, 351
Mph1103I ATGCAT 1 cut(s) 490
MunI CAATTG 2 cut(s) 380, 408
MvnI CGCG 1 cut(s) 435
NdeII GATC 1 cut(s) 324
NlaIII CATG 2 cut(s) 205, 250
NmuCI GTSAC 2 cut(s) 364, 464
NsiI ATGCAT 1 cut(s) 490
PagI TCATGA 2 cut(s) 201, 246
PciSI GCTCTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 475
PflFI GACNNNGTC 1 cut(s) 173
PleI GAGTC 2 cut(s) 148, 164
PpsI GAGTC 2 cut(s) 148, 164
PspEI GGTNACC 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 3 cut(s) 37, 377, 498
RsaNI GTAC 3 cut(s) 36, 376, 497
SapI GCTCTTC 1 cut(s) 338
Sau3AI GATC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 2 cut(s) 148, 164
SduI GDGCHC 1 cut(s) 333
SetI ASST 3 cut(s) 199, 316, 418
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 293, 380, 408, 437, 449
SsiI CCGC 2 cut(s) 220, 433
SspMI CTAG 2 cut(s) 305, 494
TaaI ACNGT 3 cut(s) 35, 56, 143
TaqI TCGA 1 cut(s) 473
TasI AATT 5 cut(s) 293, 380, 408, 437, 449
TatI WGTACW 1 cut(s) 496
TfiI GAWTC 1 cut(s) 475
TseFI GTSAC 2 cut(s) 364, 464
Tsp45I GTSAC 2 cut(s) 364, 464
TspDTI ATGAA 5 cut(s) 190, 235, 263, 325, 410
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 173
XspI CTAG 2 cut(s) 305, 494
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.