Rroxscaffold_2G00129510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000247
Physical Location & Seq
Reverse (-)
65458004 .. 65458738
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129510.1

Sequence Viewer

Length: 558 bp
ATGGATCTTAACGGTGCGGTTAATCCTCAGTATCAACCAAACATCACAAGGCAAGAAGGACACACTTCTTATGGGGCAATTTTGCACCAGTGTATTTTTTTACCAGTCATGGGCATTTTTGGATGGCTACTCCAAGTGAAGTACACATCTGCAAATGCATCTCCATTCGTCACCGACTATGTCACCATGCTGATGTTTATCGTTGCTTTCTTTGTTTACTTTGGGTCCTTGACTGTGAAGCTATTAGCCCCTGCTCCCAATTCAGACATCGAGGAGTTCATCAACAACATTAACTTCTTGTTCGGAACTCTGGCCTCTGTTTTGCTACTGCTTATCCTTGTTCGAGCTTTCGGGTTGTTTGCCCTCGTCTTGTGGACGATTTATCTTGCGAGGGATATTGCAACTAAGAAGTCGTACATGAGTGCAGTTTGCGATGTCTTCAACAGAGTAAAGGAGATGATTAATGGCCACCTGGTGGAGACTAATGCTGTACAACCCCAACCATCGCCACATATCGTTCTACAGATCGGAGATGCAGGAGAACCAAATGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.54

Weight (kDa)

5.71

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 475
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 466
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 3 cut(s) 143, 416, 492
AfiI CCNNNNNNNGG 2 cut(s) 110, 475
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 2 cut(s) 241, 347
AluI AGCT 2 cut(s) 241, 347
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 312, 466
AseI ATTAAT 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 163, 175
AvaII GGWCC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 430
BccI CCATC 2 cut(s) 117, 511
BciT130I CCWGG 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 521
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 2 cut(s) 167, 523
BpiI GAAGAC 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 475
Bse1I ACTGG 2 cut(s) 88, 104
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 110, 475
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 88, 104
BseRI GAGGAG 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 2 cut(s) 314, 468
BslI CCNNNNNNNGG 2 cut(s) 110, 475
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 2 cut(s) 314, 468
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 2 cut(s) 4, 525
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 314, 468
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 2 cut(s) 88, 104
BssMI GATC 2 cut(s) 4, 525
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 2 cut(s) 14, 235
BstAUI TGTACA 1 cut(s) 490
BstDEI CTNAG 2 cut(s) 27, 405
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 2 cut(s) 7, 528
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 4, 525
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 521
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 314, 468
BtgZI GCGATG 2 cut(s) 447, 489
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 225
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 3 cut(s) 142, 415, 491
CviAII CATG 3 cut(s) 109, 187, 418
CviJI RGCY 6 cut(s) 127, 241, 248, 314, 347, 468
CviKI_1 RGCY 6 cut(s) 127, 241, 248, 314, 347, 468
CviQI GTAC 3 cut(s) 142, 415, 491
DdeI CTNAG 2 cut(s) 27, 405
DpnI GATC 2 cut(s) 6, 527
DpnII GATC 2 cut(s) 4, 525
DraIII CACNNNGTG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 112, 190, 421
FaiI YATR 6 cut(s) 72, 110, 180, 188, 419, 513
FatI CATG 3 cut(s) 108, 186, 417
FokI GGATG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 314, 468
Hin1II CATG 3 cut(s) 112, 190, 421
HphI GGTGA 2 cut(s) 163, 175
Hpy166II GTNNAC 3 cut(s) 144, 217, 375
Hpy188I TCNGA 3 cut(s) 265, 305, 530
Hpy8I GTNNAC 3 cut(s) 144, 217, 375
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 14, 235
HpyCH4V TGCA 6 cut(s) 85, 152, 158, 401, 425, 536
HpyF3I CTNAG 2 cut(s) 27, 405
Hsp92II CATG 3 cut(s) 112, 190, 421
Kzo9I GATC 2 cut(s) 4, 525
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 101, 117, 264, 296, 458, 485, 522
LweI GCATC 2 cut(s) 167, 523
MabI ACCWGGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 169, 181
MalI GATC 2 cut(s) 6, 527
MboI GATC 2 cut(s) 4, 525
MboII GAAGA 1 cut(s) 430
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 2 cut(s) 78, 259
MluNI TGGCCA 1 cut(s) 468
MnlI CCTC 5 cut(s) 36, 265, 325, 374, 384
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 1 cut(s) 468
MseI TTAA 4 cut(s) 9, 21, 291, 462
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 468
MspR9I CCNGG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 473
NdeII GATC 2 cut(s) 4, 525
NlaIII CATG 3 cut(s) 112, 190, 421
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 169, 181
NsiI ATGCAT 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 225
PshBI ATTAAT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 225
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 3 cut(s) 143, 416, 492
RsaNI GTAC 3 cut(s) 142, 415, 491
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 4 cut(s) 9, 21, 291, 462
Sau3AI GATC 2 cut(s) 4, 525
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 473
SetI ASST 3 cut(s) 243, 349, 474
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 2 cut(s) 167, 523
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 2 cut(s) 78, 259
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 14, 235
TaqI TCGA 2 cut(s) 270, 343
TasI AATT 2 cut(s) 78, 259
TatI WGTACW 2 cut(s) 141, 490
Tru1I TTAA 4 cut(s) 9, 21, 291, 462
Tru9I TTAA 4 cut(s) 9, 21, 291, 462
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 169, 181
Tsp45I GTSAC 2 cut(s) 169, 181
TspDTI ATGAA 1 cut(s) 268
TspRI CASTG 1 cut(s) 95
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.