FvH4_6g47681

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36083917 .. 36087828
3912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47681.t1

Sequence Viewer

Length: 1137 bp
ATGGCAGACACCACTGTGGTTATCTCTTCACCTTCACAAGGGTTGATTCAAACTAAAGAATACTCTGCAGTGAAATTGCATACATGCATAATTTCTCTCATCGGCGTCTTGGGATTCTGCTTGCAACTCAAGTTCCCCAATGTGTCTCCATATGCGACGATCTACGGCTCTCAGCTGATGAACGTATTCATTATTGTGACATGCATTTACATCCTCTCTTTGATTCTAATGACAATCCAAGCAAGTCGACGCGATAACGCAGATTTGGAAGATCCGATGAACAAACTTAGCCTCTTTCTTGGAAGTCTGTCACTGAATTTGGAGTTGCTTGTCCTGCTTTCACCTTTCGGAATGATCCTACTCTTCTTATGGTGCATCTGCCTTTTATGGTTCGTCAGTAACTCTTACCAGTCTCTGAAAACACTCTTCCAAAACGCAGTTGAACATCTTGTTCGTTCCGTTGGAGAATTGAAACGGAAGCTGGTTGATTTGAATCGCCGATTAATGGACAGTAATGCAATCGCAGCAGTCGCTCGTGCCTCTCAAAAATTGAAGGACATGATCACCAGGGATGAGGGGCGGGTGACAGAGCATGAAGCCCAGAATCAGAATCACACCAGTGAAGGGCTTTGCCTCCAACTGGAGTTCGCAAATGCGTCTGCACTTGTGACTGACTGTCGCAGAACTATACTGATAAAGCTATTTATTACCGACATATCTCTTTACTTCGGATTGTTAGGTGTCATGATACTCCAAATCAATCAGAGTAATAGAGACTTCGGTGAATTCATGAATAAGATCAGCATCTTGCTTGGAACTCTTGCTTCTATTTTAGAGTTGCTCATCTTGTTTCCGCCTTTCGGATGGCTCACACTCTTCTTCTGGAGCATTTATCTTATGATCACAGCAATTGATTCGTACCAACTGTCTAAAACACTATGCAAAAGGACTGTTGCAGCTCTTATTCTAGCTTTGGGTGAATTCCAAGTGAAACTGATCTCACTAAATGGCCGCTTGATGGGATCAGTTGCTGGACTCGGTCGTGCTTATGAGAAATTGAAGGTTCTGATCAAGAGGAGCCGCTATTCGACAGCGCATGATGAAACCAAGAACCTCAGCAAGGAGCTGCCTGTGTAA

Protein Analysis

379

Amino Acids

42.39

Weight (kDa)

8.94

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AccII CGCG 1 cut(s) 252
AciI CCGC 4 cut(s) 580, 854, 1012, 1081
AclWI GGATC 3 cut(s) 266, 349, 1030
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 3 cut(s) 316, 785, 980
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 920
AfiI CCNNNNNNNGG 7 cut(s) 38, 505, 624, 640, 860, 1018, 1120
AgsI TTSAA 6 cut(s) 50, 443, 472, 493, 553, 1060
AhdI GACNNNNNGTC 1 cut(s) 675
AjnI CCWGG 1 cut(s) 566
AleI CACNNNNGTG 2 cut(s) 14, 618
AluBI AGCT 6 cut(s) 175, 481, 700, 959, 971, 1126
AluI AGCT 6 cut(s) 175, 481, 700, 959, 971, 1126
Alw26I GTCTC 3 cut(s) 150, 417, 768
AlwI GGATC 3 cut(s) 266, 349, 1030
AlwNI CAGNNNCTG 2 cut(s) 415, 1031
AoxI GGCC 1 cut(s) 1009
ApeKI GCWGC 3 cut(s) 524, 956, 1126
ApoI RAATTY 3 cut(s) 316, 785, 980
AseI ATTAAT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 1096
AsuHPI GGTGA 6 cut(s) 21, 333, 556, 595, 794, 989
BauI CACGAG 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 1115
BbvI GCAGC 3 cut(s) 536, 968, 1113
BccI CCATC 2 cut(s) 858, 1012
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 897, 931
BciT130I CCWGG 1 cut(s) 568
BclI TGATCA 3 cut(s) 561, 900, 1068
BcoDI GTCTC 3 cut(s) 150, 417, 768
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 5 cut(s) 525, 957, 1012, 1081, 1127
BlsI GCNGC 5 cut(s) 526, 958, 1013, 1082, 1128
Bme1390I CCNGG 1 cut(s) 568
BmeRI GACNNNNNGTC 1 cut(s) 675
BmiI GGNNCC 1 cut(s) 1079
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 2 cut(s) 384, 813
BpmI CTGGAG 2 cut(s) 662, 904
Bpu10I CCTNAGC 1 cut(s) 1115
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 2 cut(s) 492, 803
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 567
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 505, 624, 640, 860, 1018, 1120
Bse1I ACTGG 3 cut(s) 409, 618, 645
Bse8I GATNNNNATC 2 cut(s) 492, 803
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 3 cut(s) 210, 577, 869
BseJI GATNNNNATC 2 cut(s) 492, 803
BseLI CCNNNNNNNGG 7 cut(s) 38, 505, 624, 640, 860, 1018, 1120
BseMII CTCAG 2 cut(s) 185, 1129
BseNI ACTGG 3 cut(s) 409, 618, 645
BseRI GAGGAG 1 cut(s) 1090
BseXI GCAGC 3 cut(s) 536, 968, 1113
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 1042
BshFI GGCC 1 cut(s) 1011
BsiEI CGRYCG 1 cut(s) 1042
BslI CCNNNNNNNGG 7 cut(s) 38, 505, 624, 640, 860, 1018, 1120
BsmAI GTCTC 3 cut(s) 150, 417, 768
BsnI GGCC 1 cut(s) 1011
Bsp143I GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
BspACI CCGC 4 cut(s) 580, 854, 1012, 1081
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 2 cut(s) 184, 1128
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 2 cut(s) 744, 789
BspLI GGNNCC 1 cut(s) 1079
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 3 cut(s) 266, 349, 1030
BsrI ACTGG 3 cut(s) 409, 618, 645
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 5 cut(s) 16, 512, 677, 927, 952
Bst6I CTCTTC 4 cut(s) 31, 368, 431, 881
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 171, 287, 1115
BstENI CCTNNNNNAGG 2 cut(s) 36, 1118
BstF5I GGATG 3 cut(s) 210, 577, 869
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 9 cut(s) 162, 274, 357, 564, 801, 903, 999, 1025, 1071
BstMAI GTCTC 3 cut(s) 150, 417, 768
BstMBI GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
BstMCI CGRYCG 1 cut(s) 1042
BstMWI GCNNNNNNNGC 3 cut(s) 334, 524, 530
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 2 cut(s) 87, 204
BstSCI CCNGG 1 cut(s) 566
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 536, 968, 1113
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 1011
BtsCI GGATG 3 cut(s) 210, 577, 869
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 4 cut(s) 12, 75, 311, 625
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 2 cut(s) 415, 1031
CciI TCATGA 2 cut(s) 744, 789
CfoI GCGC 1 cut(s) 1096
CseI GACGC 3 cut(s) 94, 258, 645
Csp6I GTAC 1 cut(s) 919
CviAII CATG 7 cut(s) 84, 201, 559, 593, 745, 790, 1097
CviQI GTAC 1 cut(s) 919
DdeI CTNAG 3 cut(s) 171, 287, 1115
DpnI GATC 9 cut(s) 161, 273, 356, 563, 800, 902, 998, 1024, 1070
DpnII GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
DriI GACNNNNNGTC 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 4 cut(s) 31, 368, 431, 881
Eam1105I GACNNNNNGTC 1 cut(s) 675
EarI CTCTTC 4 cut(s) 31, 368, 431, 881
EciI GGCGGA 1 cut(s) 843
EcoNI CCTNNNNNAGG 2 cut(s) 36, 1118
EcoRI GAATTC 2 cut(s) 785, 980
EcoRII CCWGG 1 cut(s) 566
EcoT22I ATGCAT 2 cut(s) 89, 206
FaeI CATG 7 cut(s) 87, 204, 562, 596, 748, 793, 1100
FatI CATG 7 cut(s) 83, 200, 558, 592, 744, 789, 1096
FauI CCCGC 1 cut(s) 573
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 3 cut(s) 561, 900, 1068
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 525, 957, 1012, 1081, 1127
FokI GGATG 3 cut(s) 197, 584, 876
Fsp4HI GCNGC 5 cut(s) 525, 957, 1012, 1081, 1127
FspBI CTAG 1 cut(s) 968
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 5 cut(s) 525, 957, 1012, 1081, 1127
GsuI CTGGAG 2 cut(s) 662, 904
HaeIII GGCC 1 cut(s) 1011
HgaI GACGC 3 cut(s) 94, 258, 645
HhaI GCGC 1 cut(s) 1096
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 7 cut(s) 87, 204, 562, 596, 748, 793, 1100
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HinfI GANTC 8 cut(s) 46, 114, 223, 493, 604, 610, 914, 1035
HphI GGTGA 6 cut(s) 21, 333, 556, 595, 794, 989
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 8 cut(s) 276, 350, 417, 609, 731, 765, 863, 1068
Hpy188III TCNNGA 4 cut(s) 745, 790, 883, 1072
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 2 cut(s) 160, 252
HpyAV CCTTC 4 cut(s) 42, 547, 617, 1054
HpyCH4III ACNGT 5 cut(s) 16, 512, 677, 927, 952
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 524, 530
HpyF3I CTNAG 3 cut(s) 171, 287, 1115
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 7 cut(s) 87, 204, 562, 596, 748, 793, 1100
HspAI GCGC 1 cut(s) 1094
Ksp22I TGATCA 3 cut(s) 561, 900, 1068
Kzo9I GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
LmnI GCTCC 3 cut(s) 885, 1077, 1123
Lsp1109I GCAGC 3 cut(s) 536, 968, 1113
LweI GCATC 2 cut(s) 384, 813
MaeI CTAG 1 cut(s) 968
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 5 cut(s) 196, 309, 398, 583, 667
MalI GATC 9 cut(s) 161, 273, 356, 563, 800, 902, 998, 1024, 1070
MboI GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
MboII GAAGA 6 cut(s) 18, 281, 355, 418, 868, 871
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 1 cut(s) 271
MluCI AATT 9 cut(s) 74, 90, 316, 467, 548, 785, 909, 980, 1055
MlyI GAGTC 1 cut(s) 1029
MmeI TCCRAC 2 cut(s) 442, 661
MnlI CCTC 7 cut(s) 224, 302, 550, 568, 644, 1068, 1124
Mph1103I ATGCAT 2 cut(s) 89, 206
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 3 cut(s) 14, 194, 618
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 568
MunI CAATTG 1 cut(s) 909
MvaI CCWGG 1 cut(s) 568
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 334, 524, 530
NdeI CATATG 1 cut(s) 151
NdeII GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
NlaIII CATG 7 cut(s) 87, 204, 562, 596, 748, 793, 1100
NlaIV GGNNCC 1 cut(s) 1079
NmuCI GTSAC 4 cut(s) 196, 309, 583, 667
NsiI ATGCAT 2 cut(s) 89, 206
NspI RCATGY 2 cut(s) 87, 204
OliI CACNNNNGTG 2 cut(s) 14, 618
PagI TCATGA 2 cut(s) 744, 789
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 7 cut(s) 46, 114, 223, 493, 604, 610, 914
PflFI GACNNNGTC 1 cut(s) 1038
PkrI GCNGC 5 cut(s) 526, 958, 1013, 1082, 1128
PleI GAGTC 1 cut(s) 1029
PpsI GAGTC 1 cut(s) 1029
PshBI ATTAAT 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspN4I GGNNCC 1 cut(s) 1079
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 2 cut(s) 415, 1031
PsuI RGATCY 1 cut(s) 271
PsyI GACNNNGTC 1 cut(s) 1038
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 920
RsaNI GTAC 1 cut(s) 919
RseI CAYNNNNRTG 3 cut(s) 14, 194, 618
SalI GTCGAC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 5 cut(s) 525, 957, 1012, 1081, 1127
Sau3AI GATC 9 cut(s) 159, 271, 354, 561, 798, 900, 996, 1022, 1068
SchI GAGTC 1 cut(s) 1029
ScrFI CCNGG 1 cut(s) 568
SfaNI GCATC 2 cut(s) 384, 813
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 3 cut(s) 14, 194, 618
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 9 cut(s) 74, 90, 316, 467, 548, 785, 909, 980, 1055
SsiI CCGC 4 cut(s) 580, 854, 1012, 1081
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 1 cut(s) 566
TaaI ACNGT 5 cut(s) 16, 512, 677, 927, 952
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 247, 1088
TaqII GACCGA 1 cut(s) 1028
TasI AATT 9 cut(s) 74, 90, 316, 467, 548, 785, 909, 980, 1055
TauI GCSGC 2 cut(s) 1014, 1083
TfiI GAWTC 7 cut(s) 46, 114, 223, 493, 604, 610, 914
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 4 cut(s) 19, 75, 318, 625
TseFI GTSAC 4 cut(s) 196, 309, 583, 667
TseI GCWGC 3 cut(s) 524, 956, 1126
Tsp45I GTSAC 4 cut(s) 196, 309, 583, 667
TspDTI ATGAA 7 cut(s) 178, 194, 293, 609, 778, 806, 1116
TspGWI ACGGA 2 cut(s) 448, 490
TspRI CASTG 4 cut(s) 19, 75, 318, 625
Tth111I GACNNNGTC 1 cut(s) 1038
VspI ATTAAT 1 cut(s) 503
XagI CCTNNNNNAGG 2 cut(s) 36, 1118
XapI RAATTY 3 cut(s) 316, 785, 980
XceI RCATGY 2 cut(s) 87, 204
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 968
Zsp2I ATGCAT 2 cut(s) 89, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.