Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

9454661 .. 9455227

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCATTGCACAAATGCATTTTCTCTCTCATCACTATTTTAGGCTTTTGCCTCCAACTGAAATTCGCAAATATGTCTCCATTTCTGCTGGACTACAGAAATACTATACTGATGAGGCTATTTATTATTGACATATCTATCTGCTTACTTAACACAGTCTTTGGTGAATTCATGAATGGGATTAGCCTATTGTTTGGAACTGCAGCTTCTATTTTAGAGTTGCTCATCCTATTGCCACCTTTTGGATGGTTCGCACTCTTCTTCTGGAGCATCTGTTTCATTACCTTTGCCATTAAGTCATACCAATACTCGAAACAGTATGTGAAAGTGCAGTACGTTGCAGCTCTTGTTGTAACCTTGAGTGATTTCCAAGTGAAGCTGGTCGTAATGAATGGCCGCTTGATGGGAAGTAGTGCAGTTGCCGGACTCGGTCGTGCTTATGAGAAATTGAGCGATCTGATCAAGAGGAGCCACTATTCAACAGAGCATGAAACCAAGGAACAGAGCAAGGAGCTACCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

174

Amino Acids

19.76

Weight (kDa)

8.9

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	62, 167
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	242, 403
AgeI	ACCGGT	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	480
AluBI	AGCT	4 cut(s)	206, 344, 379, 514
AluI	AGCT	4 cut(s)	206, 344, 379, 514
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	203, 341
ApoI	RAATTY	2 cut(s)	62, 167
AsiGI	ACCGGT	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	215, 353
BccI	CCATC	2 cut(s)	240, 397
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	2 cut(s)	94, 201
BisI	GCNGC	3 cut(s)	204, 342, 397
BlsI	GCNGC	3 cut(s)	205, 343, 398
BmiI	GGNNCC	1 cut(s)	470
BmsI	GCATC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 403
Bse118I	RCCGGY	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	225, 251
BseLI	CCNNNNNNNGG	2 cut(s)	242, 403
BseMI	GCAATG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	215, 353
BsgI	GTGCAG	2 cut(s)	350, 435
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	423, 518
BslI	CCNNNNNNNGG	2 cut(s)	242, 403
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	454, 459
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	470
BspMAI	CTGCAG	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	454, 459
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	157, 318
Bst6I	CTCTTC	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	225, 251
BstKTI	GATC	2 cut(s)	457, 462
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	454, 459
BstMCI	CGRYCG	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	94, 201
BstV1I	GCAGC	2 cut(s)	215, 353
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	225, 251
CciI	TCATGA	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	517
CviAII	CATG	2 cut(s)	172, 488
CviJI	RGCY	9 cut(s)	45, 118, 186, 206, 344, 379, 396, 471, 514
CviKI_1	RGCY	9 cut(s)	45, 118, 186, 206, 344, 379, 396, 471, 514
CviQI	GTAC	1 cut(s)	334
DpnI	GATC	2 cut(s)	456, 461
DpnII	GATC	2 cut(s)	454, 459
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	175, 491
FaiI	YATR	8 cut(s)	74, 107, 134, 173, 301, 321, 441, 489
FatI	CATG	2 cut(s)	171, 487
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	204, 342, 397
FokI	GGATG	2 cut(s)	212, 258
Fsp4HI	GCNGC	3 cut(s)	204, 342, 397
GluI	GCNGC	3 cut(s)	204, 342, 397
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	423, 518
Hin1II	CATG	2 cut(s)	175, 491
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	2 cut(s)	423, 518
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	172, 265, 463
HpyCH4III	ACNGT	2 cut(s)	157, 318
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	6 cut(s)	10, 18, 203, 331, 341, 416
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	175, 491
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	454, 459
LmnI	GCTCC	3 cut(s)	267, 468, 511
LpnPI	CCDG	4 cut(s)	74, 250, 365, 436
Lsp1109I	GCAGC	2 cut(s)	215, 353
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	456, 461
MboI	GATC	2 cut(s)	454, 459
MboII	GAAGA	2 cut(s)	250, 253
MluCI	AATT	3 cut(s)	62, 167, 446
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	62, 108, 459
Mph1103I	ATGCAT	1 cut(s)	20
MseI	TTAA	2 cut(s)	150, 294
MspI	CCGG	2 cut(s)	423, 518
NdeII	GATC	2 cut(s)	454, 459
NlaIII	CATG	2 cut(s)	175, 491
NlaIV	GGNNCC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	20
PagI	TCATGA	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	517
PkrI	GCNGC	3 cut(s)	205, 343, 398
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	429
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	150, 294
SatI	GCNGC	3 cut(s)	204, 342, 397
Sau3AI	GATC	2 cut(s)	454, 459
SchI	GAGTC	1 cut(s)	420
SetI	ASST	8 cut(s)	208, 241, 287, 339, 346, 359, 381, 516
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	94, 201
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	3 cut(s)	62, 167, 446
SsiI	CCGC	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	157, 318
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	311
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	3 cut(s)	62, 167, 446
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	150, 294
Tru9I	TTAA	2 cut(s)	150, 294
TseI	GCWGC	2 cut(s)	203, 341
TspDTI	ATGAA	5 cut(s)	160, 188, 268, 404, 504
Tth111I	GACNNNGTC	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	62, 167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.