Rmu_sc0002966.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002966.1
OG0000247
Physical Location & Seq
Reverse (-)
44187 .. 45672
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002966.1_g000007.1.cds

Sequence Viewer

Length: 711 bp
atgagtagatgcaactctggtctacgggtcgggttacagtccgtcgaattcaaccggttgaaaacaatagggattagctgcaagggagggagcctctgggcgggcacaagtcggccaggtctttgctgttctggggaggaggttcaaagttctaaaggggcattgcactcgtatatgcacccgtacattctctctttaatcgccatgctgggcttgctccctcaagtgaagcaggcagccgggagtaaatctccatttgacacagatcatctcactatgctgacctttattgctgttttcttgatttacatcgggtcactggcaattctcaagaaattgcaccctcccaattcagatttggctgaatttctgctcaatattagcctctgccttggatcccttgctgcaggcttaccattgctcatcctagttcgagcttttgggtggttcaccctctggtcattggctagtgtcaagatactccaagccgatcaatccaacttggatttggaggaactcttgaataagattagcatcgcgtgtggaactcttgccttgattttgcaattgctgatccttattccagctttcagatggctcgccttcatcttctggggcatattttttgtgagcgttacgaccgagtcataccaatacttaaaaactctccatgacaaggaagtgatcatcatcattgatgttcccacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.87

Weight (kDa)

8.21

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AccII CGCG 1 cut(s) 539
AciI CCGC 1 cut(s) 101
AclWI GGATC 3 cut(s) 390, 403, 568
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 47, 365
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 100, 676
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 4 cut(s) 52, 61, 146, 523
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 78, 437, 587
AluI AGCT 3 cut(s) 78, 437, 587
AlwI GGATC 3 cut(s) 390, 403, 568
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 3 cut(s) 78, 236, 404
ApoI RAATTY 2 cut(s) 47, 365
AsiGI ACCGGT 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 107
BamHI GGATCC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 65, 248, 391
BccI CCATC 1 cut(s) 588
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 2 cut(s) 428, 468
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 3 cut(s) 79, 237, 405
BlsI GCNGC 3 cut(s) 80, 238, 406
Bme1390I CCNGG 2 cut(s) 117, 241
BmiI GGNNCC 2 cut(s) 92, 397
BmrFI CCNGG 2 cut(s) 117, 241
BmsI GCATC 1 cut(s) 543
BplI GAGNNNNNCTC 4 cut(s) 78, 110, 235, 267
BpuEI CTTGAG 2 cut(s) 207, 314
BpuMI CCSGG 1 cut(s) 241
BsaBI GATNNNNATC 3 cut(s) 308, 533, 689
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 676
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 161, 416
Bse8I GATNNNNATC 3 cut(s) 308, 533, 689
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 3 cut(s) 308, 533, 689
BseLI CCNNNNNNNGG 2 cut(s) 100, 676
BseMI GCAATG 2 cut(s) 161, 416
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 3 cut(s) 65, 248, 391
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 539
Bsh1285I CGRYCG 1 cut(s) 642
BshFI GGCC 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 642
BsiSI CCGG 2 cut(s) 55, 240
BslI CCNNNNNNNGG 2 cut(s) 100, 676
BsnI GGCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 5 cut(s) 265, 395, 490, 573, 684
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 115
BspFNI CGCG 1 cut(s) 539
BspLI GGNNCC 2 cut(s) 92, 397
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 3 cut(s) 390, 403, 568
BsrDI GCAATG 2 cut(s) 161, 416
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 5 cut(s) 265, 395, 490, 573, 684
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 39
BstC8I GCNNGC 5 cut(s) 103, 215, 234, 409, 600
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 539
BstKTI GATC 5 cut(s) 268, 398, 493, 576, 687
BstMBI GATC 5 cut(s) 265, 395, 490, 573, 684
BstMCI CGRYCG 1 cut(s) 642
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 115, 239
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 539
BstV1I GCAGC 3 cut(s) 65, 248, 391
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 520
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 5 cut(s) 103, 215, 234, 409, 600
Cfr10I RCCGGY 1 cut(s) 54
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 2 cut(s) 205, 671
CviQI GTAC 1 cut(s) 184
DpnI GATC 5 cut(s) 267, 397, 492, 575, 686
DpnII GATC 5 cut(s) 265, 395, 490, 573, 684
EaeI YGGCCR 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 208, 674
FaiI YATR 7 cut(s) 174, 176, 206, 278, 620, 649, 672
FatI CATG 2 cut(s) 204, 670
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 79, 237, 405
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 79, 237, 405
FspBI CTAG 2 cut(s) 428, 468
GluI GCNGC 3 cut(s) 79, 237, 405
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 55, 240
Hin1II CATG 2 cut(s) 208, 674
HinfI GANTC 1 cut(s) 644
HpaII CCGG 2 cut(s) 55, 240
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 23, 450
Hpy188I TCNGA 2 cut(s) 355, 593
Hpy188III TCNNGA 4 cut(s) 301, 331, 475, 520
Hpy8I GTNNAC 2 cut(s) 23, 450
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 613
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 7 cut(s) 12, 81, 166, 178, 340, 407, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
Hsp92II CATG 2 cut(s) 208, 674
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 5 cut(s) 265, 395, 490, 573, 684
LmnI GCTCC 2 cut(s) 90, 222
Lsp1109I GCAGC 3 cut(s) 65, 248, 391
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 428, 468
MaeIII GTNAC 3 cut(s) 33, 315, 634
MalI GATC 5 cut(s) 267, 397, 492, 575, 686
MboI GATC 5 cut(s) 265, 395, 490, 573, 684
MboII GAAGA 1 cut(s) 601
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 6 cut(s) 47, 324, 335, 349, 365, 566
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 9 cut(s) 80, 104, 130, 133, 231, 354, 395, 464, 505
MseI TTAA 2 cut(s) 197, 659
MspI CCGG 2 cut(s) 55, 240
MspR9I CCNGG 2 cut(s) 117, 241
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 241
NdeII GATC 5 cut(s) 265, 395, 490, 573, 684
NlaIII CATG 2 cut(s) 208, 674
NlaIV GGNNCC 2 cut(s) 92, 397
NmuCI GTSAC 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 643
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 3 cut(s) 80, 238, 406
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 92, 397
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 643
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 197, 659
SatI GCNGC 3 cut(s) 79, 237, 405
Sau3AI GATC 5 cut(s) 265, 395, 490, 573, 684
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 2 cut(s) 117, 241
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 80, 121, 144, 287, 439, 589
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 222, 329
SmoI CTYRAG 2 cut(s) 222, 329
Sse9I AATT 6 cut(s) 47, 324, 335, 349, 365, 566
SsiI CCGC 1 cut(s) 101
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 428, 468
StyD4I CCNGG 2 cut(s) 115, 239
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 45, 433
TaqII GACCGA 1 cut(s) 656
TasI AATT 6 cut(s) 47, 324, 335, 349, 365, 566
Tru1I TTAA 2 cut(s) 197, 659
Tru9I TTAA 2 cut(s) 197, 659
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 3 cut(s) 78, 236, 404
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 324
Tth111I GACNNNGTC 1 cut(s) 643
XapI RAATTY 2 cut(s) 47, 365
XcmI CCANNNNNNNNNTGG 3 cut(s) 355, 505, 591
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 2 cut(s) 428, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.