pycom01g18590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000247
Physical Location & Seq
Forward (+)
17517145 .. 17517753
609 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18590.1

Sequence Viewer

Length: 609 bp
ATGTATACCATTCGCAGCAGCACTAGGGTGGAGGGTGGTCATTCCAATTCTCTACCGTCAGAACACAAATGTATATTCTTTCTCCTCACCATGCTAGGAGTCCTCCTCCAGGTGAAGCATGCGACTGGAGATATGCCGTCTCCATTTGTCACAGACCACAACACTGTTGTGATGTTGATCGCTGATTTATTCACTTACGCGGGGGCATTGGCGACTGTCAAGATATTCCAAGCTTCCAACAATACAGAGATATGTGAATTGATGAACAAACTCAGCCTCTTGTGCGGAACTCTTGCATTGATTCTAATGGTGCTCATCCTCGTTCCAAATTTTGGTTGGTTTACTCTCGCATGTTGGGTCATATATTTTGCGATAATTGTGACCAAGTCCTACCAAACCCTAAAAAGACTCTGTAATGCAGCTGTTCGTTATGTCCATCATAAAATGAAGGCAGGTGTTCGTCATGTCTGTGACAGAATGAAGGCAGGTGTTCGTTATGTCTGTGACAGAATGAAGGCAGCAATTTGTTATGTCCGTGACAAAATGAAGGAGCTGATGATCATATCGAAGGGCACCAAAGAACCCCAAAACCAGAATGGGATGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

9.4

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 443, 476
Acc36I ACCTGC 2 cut(s) 443, 476
AccB1I GGYRCC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 332
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 200, 285
AcsI RAATTY 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 109, 332
AjnI CCWGG 1 cut(s) 108
AleI CACNNNNGTG 2 cut(s) 26, 167
AluBI AGCT 3 cut(s) 233, 422, 553
AluI AGCT 3 cut(s) 233, 422, 553
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 15, 18, 419, 518
ApoI RAATTY 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 79, 124
BaeGI GKGCMC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 27, 30, 431, 530
BccI CCATC 1 cut(s) 444
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 24, 95
BfuAI ACCTGC 2 cut(s) 443, 476
BisI GCNGC 4 cut(s) 16, 19, 420, 519
BlsI GCNGC 4 cut(s) 17, 20, 421, 520
Bme1390I CCNGG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BpmI CTGGAG 2 cut(s) 92, 147
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 332
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 315, 606
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 109, 332
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 2 cut(s) 74, 95
BseSI GKGCMC 1 cut(s) 575
BseXI GCAGC 4 cut(s) 27, 30, 431, 530
Bsh1236I CGCG 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 109, 332
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 315, 575
Bsp143I GATC 2 cut(s) 177, 558
BspACI CCGC 2 cut(s) 200, 285
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 574
BspMI ACCTGC 2 cut(s) 443, 476
BspT107I GGYRCC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 130
BssMI GATC 2 cut(s) 177, 558
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 57, 166, 217
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 315, 606
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 2 cut(s) 180, 561
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 177, 558
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 122, 354
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 575
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 4 cut(s) 27, 30, 431, 530
BstZ17I GTATAC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 315, 606
BtsIMutI CAGTG 1 cut(s) 162
BveI ACCTGC 2 cut(s) 443, 476
Cac8I GCNNGC 1 cut(s) 120
CviAII CATG 4 cut(s) 91, 119, 351, 464
CviJI RGCY 4 cut(s) 233, 276, 422, 553
CviKI_1 RGCY 4 cut(s) 233, 276, 422, 553
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 179, 560
DpnII GATC 2 cut(s) 177, 558
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 94, 122, 354, 467
FatI CATG 4 cut(s) 90, 118, 350, 463
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 16, 19, 420, 519
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 4 cut(s) 16, 19, 420, 519
FspBI CTAG 2 cut(s) 24, 95
GluI GCNGC 4 cut(s) 16, 19, 420, 519
GsuI CTGGAG 2 cut(s) 92, 147
Hin1II CATG 4 cut(s) 94, 122, 354, 467
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 3 cut(s) 99, 301, 408
HphI GGTGA 2 cut(s) 79, 124
Hpy166II GTNNAC 2 cut(s) 6, 342
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 6, 342
HpyAV CCTTC 5 cut(s) 442, 475, 508, 541, 562
HpyCH4III ACNGT 3 cut(s) 57, 166, 217
HpyCH4V TGCA 2 cut(s) 296, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 4 cut(s) 94, 122, 354, 467
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 2 cut(s) 177, 558
LmnI GCTCC 1 cut(s) 550
LpnPI CCDG 6 cut(s) 95, 111, 122, 438, 471, 605
Lsp1109I GCAGC 4 cut(s) 27, 30, 431, 530
LweI GCATC 1 cut(s) 591
MaeI CTAG 2 cut(s) 24, 95
MaeIII GTNAC 5 cut(s) 148, 379, 470, 503, 536
MalI GATC 2 cut(s) 179, 560
MboI GATC 2 cut(s) 177, 558
MhlI GDGCHC 2 cut(s) 315, 575
MluCI AATT 5 cut(s) 46, 257, 328, 375, 522
MlyI GAGTC 2 cut(s) 108, 402
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 25, 95, 113, 116, 287, 329
MslI CAYNNNNRTG 3 cut(s) 26, 167, 468
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeII GATC 2 cut(s) 177, 558
NlaIII CATG 4 cut(s) 94, 122, 354, 467
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 5 cut(s) 148, 379, 470, 503, 536
NspI RCATGY 2 cut(s) 122, 354
OliI CACNNNNGTG 2 cut(s) 26, 167
PaeI GCATGC 1 cut(s) 122
PaqCI CACCTGC 2 cut(s) 443, 476
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 4 cut(s) 17, 20, 421, 520
PleI GAGTC 2 cut(s) 107, 402
PpsI GAGTC 2 cut(s) 107, 402
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 3 cut(s) 26, 167, 468
SatI GCNGC 4 cut(s) 16, 19, 420, 519
Sau3AI GATC 2 cut(s) 177, 558
SchI GAGTC 2 cut(s) 108, 402
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 315, 575
SetI ASST 6 cut(s) 114, 235, 424, 457, 490, 555
SfaNI GCATC 1 cut(s) 591
SmiMI CAYNNNNRTG 3 cut(s) 26, 167, 468
SphI GCATGC 1 cut(s) 122
Sse9I AATT 5 cut(s) 46, 257, 328, 375, 522
SsiI CCGC 2 cut(s) 200, 285
SspMI CTAG 2 cut(s) 24, 95
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 57, 166, 217
TaqI TCGA 1 cut(s) 566
TasI AATT 5 cut(s) 46, 257, 328, 375, 522
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 5 cut(s) 148, 379, 470, 503, 536
TseI GCWGC 4 cut(s) 15, 18, 419, 518
Tsp45I GTSAC 5 cut(s) 148, 379, 470, 503, 536
TspDTI ATGAA 5 cut(s) 278, 461, 494, 527, 560
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 385
Van91I CCANNNNNTGG 1 cut(s) 332
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 328
XceI RCATGY 2 cut(s) 122, 354
XcmI CCANNNNNNNNNTGG 2 cut(s) 333, 593
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 24, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.