Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

110941 .. 111573

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggactggttctcgggaatctcgggagatgtcaaaatcttttttatcaactgtttttggtattatattatatttttggaagctctcatcggagtcctaggcttctgcctccaactcaagtttccagatgcgtctgcatttgcgaccgcctacggcactgtgatgatggacctcttcattattgacacatgcttttacatcgtctctttagttttgatgggaatcatggccgctcgcaataatacagatttcgaagatgtgatgaacaaaattagcctcttacttggaagtctgtccctgattttagagttgctcgtccttattccacctttcggatggatcctacttttcttctggagcatctggctcttatgcttcctgattaagtattactcttctctgaacacactctaccaaagtgcagttgcacttgttgttgaagactatggagaattgaaacagaagctggttgatttgaatcgtcgcttgatgaacagtgatgcaattgcacaacttggtcgtacctatcagacattgaaggacctgatcatcaggaatgacgggcgcatgacaaggcatgaagcccagaaccagaaccagaaccacaccactgagctacggctacctgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

210

Amino Acids

24.19

Weight (kDa)

5.11

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	233
AciI	CCGC	2 cut(s)	147, 231
AclWI	GGATC	2 cut(s)	334, 347
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	440, 457, 478, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	83, 466, 616
AluI	AGCT	3 cut(s)	83, 466, 616
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	334, 347
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	2 cut(s)	13, 22
AoxI	GGCC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	2 cut(s)	169, 541
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	2 cut(s)	13, 22
AvaII	GGWCC	2 cut(s)	169, 541
AvrII	CCTAGG	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	447
BccI	CCATC	3 cut(s)	160, 211, 330
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	231
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	169, 541
BmeT110I	CYCGRG	2 cut(s)	13, 22
BmgT120I	GGNCC	2 cut(s)	169, 541
BmiI	GGNNCC	1 cut(s)	341
BmsI	GCATC	3 cut(s)	118, 369, 490
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	221, 477
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	2 cut(s)	221, 477
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	341
BseJI	GATNNNNATC	2 cut(s)	221, 477
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	147
BsiHKCI	CYCGRG	2 cut(s)	13, 22
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	2 cut(s)	13, 22
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	339, 546
BspACI	CCGC	2 cut(s)	147, 231
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	334, 347
BspT104I	TTCGAA	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	339, 546
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	53, 160, 497
Bst6I	CTCTTC	2 cut(s)	179, 400
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	342, 549
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	339, 546
BstMCI	CGRYCG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	341
BtsIMutI	CAGTG	3 cut(s)	156, 502, 609
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	466
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	169, 541
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	4 cut(s)	189, 226, 568, 578
CviJI	RGCY	9 cut(s)	83, 102, 230, 276, 367, 466, 584, 616, 622
CviKI_1	RGCY	9 cut(s)	83, 102, 230, 276, 367, 466, 584, 616, 622
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	2 cut(s)	341, 548
DpnII	GATC	2 cut(s)	339, 546
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	179, 400
EarI	CTCTTC	2 cut(s)	179, 400
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	169, 541
Eco88I	CYCGRG	2 cut(s)	13, 22
EcoO109I	RGGNCCY	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	4 cut(s)	192, 229, 571, 581
FaiI	YATR	8 cut(s)	66, 71, 190, 227, 373, 447, 569, 579
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	4 cut(s)	188, 225, 567, 577
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	230
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	4 cut(s)	192, 229, 571, 581
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	4 cut(s)	18, 93, 222, 478
Hpy188I	TCNGA	4 cut(s)	92, 335, 402, 531
Hpy188III	TCNNGA	6 cut(s)	15, 24, 125, 355, 379, 553
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	3 cut(s)	53, 160, 497
HpyCH4V	TGCA	5 cut(s)	137, 422, 428, 503, 509
HpyF3I	CTNAG	1 cut(s)	612
Hsp92II	CATG	4 cut(s)	192, 229, 571, 581
HspAI	GCGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	339, 546
LmnI	GCTCC	1 cut(s)	357
LweI	GCATC	3 cut(s)	118, 369, 490
MaeI	CTAG	1 cut(s)	98
MalI	GATC	2 cut(s)	341, 548
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	2 cut(s)	339, 546
MboII	GAAGA	5 cut(s)	166, 266, 343, 387, 452
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	3 cut(s)	270, 452, 504
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	119, 182, 287
MseI	TTAA	2 cut(s)	384, 631
MslI	CAYNNNNRTG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	504
NdeII	GATC	2 cut(s)	339, 546
NlaIII	CATG	4 cut(s)	192, 229, 571, 581
NlaIV	GGNNCC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	18, 222, 478
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	169, 541
PspPPI	RGGWCCY	1 cut(s)	541
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	339
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	384, 631
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	339, 546
Sau96I	GGNCC	2 cut(s)	169, 541
SchI	GAGTC	1 cut(s)	102
SetI	ASST	8 cut(s)	85, 174, 331, 468, 527, 546, 618, 628
SfaNI	GCATC	3 cut(s)	118, 369, 490
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	2 cut(s)	169, 541
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	270, 452, 504
SsiI	CCGC	2 cut(s)	147, 231
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	53, 160, 497
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	270, 452, 504
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	18, 222, 478
Tru1I	TTAA	2 cut(s)	384, 631
Tru9I	TTAA	2 cut(s)	384, 631
TscAI	CASTG	3 cut(s)	163, 502, 616
TspDTI	ATGAA	4 cut(s)	166, 278, 506, 594
TspRI	CASTG	3 cut(s)	163, 502, 616
VpaK11BI	GGWCC	2 cut(s)	169, 541
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.