Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36048202 .. 36048796

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47644.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCATACCTGCATAATATCTTTCATCACCATCTTCGGCGTAGGCCTCCAACTCAAGTTCCCAAATGTTTCTCCATACGAGACGGCCTACGGCACTCTGATGATGAACCTCTTTATTATTGAGATATGCTTTTACCTCGCCTCTTTAGTTGTGATGGCAATCCAAGCTGCTAGCAATAATGGAAGATCTGACGAACAAGATTGGCCTCCTGCTTGGAACTCTGTCCCTGATTTTAGAGTTGCTCGTTCTTATCTCACCCTTTGGATGGATCGTACTGTTCTTCTGGAGCATCTGCCTTCTATGCTTCCTGAACAGACGTTGATCGATTGGTATCGCCGCATGATGGTTAGAAATGATGAAGTGGACAATATGAGCATCAGAAACAACGGGGCCGCTACTGAGCTTCGGACCCAGAATCTCAACATCAGCAATGACAGGCAGGCTGCAGAGCATCAATCCCAGGACCAGAATCACACCAACGCGGCAGAGCATGTAATTTCAATACCTGATGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

4.82

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	482
AciI	CCGC	3 cut(s)	337, 393, 482
AclWI	GGATC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	265, 343
AgsI	TTSAA	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	2 cut(s)	167, 403
AluI	AGCT	2 cut(s)	167, 403
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	4 cut(s)	43, 84, 203, 390
ApeKI	GCWGC	2 cut(s)	167, 443
AspS9I	GGNCC	3 cut(s)	390, 408, 463
AsuHPI	GGTGA	2 cut(s)	19, 247
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	408, 463
BbvI	GCAGC	2 cut(s)	154, 430
BccI	CCATC	4 cut(s)	38, 148, 259, 337
BceAI	ACGGC	2 cut(s)	99, 106
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	5 cut(s)	168, 337, 393, 444, 483
BlsI	GCNGC	5 cut(s)	169, 338, 394, 445, 484
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	408, 463
BmgT120I	GGNCC	3 cut(s)	390, 408, 463
BmiI	GGNNCC	2 cut(s)	391, 410
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	298, 384, 460
BmtI	GCTAGC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	324
BsaBI	GATNNNNATC	2 cut(s)	158, 330
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 343
Bse3DI	GCAATG	1 cut(s)	436
Bse8I	GATNNNNATC	2 cut(s)	158, 330
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	2 cut(s)	158, 330
BseLI	CCNNNNNNNGG	2 cut(s)	265, 343
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	154, 430
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	4 cut(s)	45, 86, 205, 392
BshVI	ATCGAT	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	265, 343
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	45, 86, 205, 392
Bsp143I	GATC	3 cut(s)	185, 268, 321
BspACI	CCGC	3 cut(s)	337, 393, 482
BspANI	GGCC	4 cut(s)	45, 86, 205, 392
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	391, 410
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	185, 268, 321
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	172, 441
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	3 cut(s)	188, 271, 324
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	185, 268, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 301
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	154, 430
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	4 cut(s)	45, 86, 205, 392
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	172, 441
Cfr13I	GGNCC	3 cut(s)	390, 408, 463
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	340, 491
CviJI	RGCY	7 cut(s)	45, 86, 167, 205, 392, 403, 443
CviKI_1	RGCY	7 cut(s)	45, 86, 167, 205, 392, 403, 443
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	187, 270, 323
DpnII	GATC	3 cut(s)	185, 268, 321
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	408, 463
EcoRII	CCWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	343, 494
FaiI	YATR	8 cut(s)	6, 14, 76, 127, 302, 341, 371, 492
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	339, 490
Fnu4HI	GCNGC	5 cut(s)	168, 337, 393, 444, 483
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	5 cut(s)	168, 337, 393, 444, 483
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	5 cut(s)	168, 337, 393, 444, 483
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	45, 86, 205, 392
Hin1II	CATG	2 cut(s)	343, 494
HinfI	GANTC	3 cut(s)	415, 469, 512
HphI	GGTGA	2 cut(s)	19, 247
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	99, 190, 380, 408
Hpy188III	TCNNGA	3 cut(s)	284, 308, 516
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	4, 12, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 301
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	343, 494
Kzo9I	GATC	3 cut(s)	185, 268, 321
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	154, 430
LweI	GCATC	3 cut(s)	298, 384, 460
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	187, 270, 323
MboI	GATC	3 cut(s)	185, 268, 321
MboII	GAAGA	3 cut(s)	25, 195, 272
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	56, 119, 146, 151, 216
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	164, 301
NdeII	GATC	3 cut(s)	185, 268, 321
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	343, 494
NlaIV	GGNNCC	2 cut(s)	391, 410
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	415, 469
PkrI	GCNGC	5 cut(s)	169, 338, 394, 445, 484
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	391, 410
PspPI	GGNCC	3 cut(s)	390, 408, 463
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	5 cut(s)	168, 337, 393, 444, 483
Sau3AI	GATC	3 cut(s)	185, 268, 321
Sau96I	GGNCC	3 cut(s)	390, 408, 463
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	461
SetI	ASST	7 cut(s)	11, 111, 138, 169, 320, 405, 508
SfaNI	GCATC	3 cut(s)	298, 384, 460
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	408, 463
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	495
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	3 cut(s)	337, 393, 482
SspMI	CTAG	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	495
TauI	GCSGC	3 cut(s)	339, 395, 485
TfiI	GAWTC	2 cut(s)	415, 469
TseI	GCWGC	2 cut(s)	167, 443
TspDTI	ATGAA	3 cut(s)	13, 119, 372
VpaK11BI	GGWCC	2 cut(s)	408, 463
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.