Rorug05G0573300

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
76806663 .. 76807226
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0573300.1

Sequence Viewer

Length: 360 bp
ATGTTTTTTGGTTACTCTGGGAATGAGAACCAAAGGGATTATGCCTGGGTTAAAAGGGGATCACTTTTTCCATTTATGGATTATATAGACAGGTTTCAAGAGCAGTCTGAACTGGGCAACTGCAAGCCCTGTGATTTCCAGATGGCAACTGAGGAGGCATTTTTGGTGGATCAAGGGTTTACCGAGAAGTTGATAGCAGATATAAACATGGCAGCTGGGAACCCAGTGTATGATGAATCCGTACTTAGAGGAGTTCAAGAGGCTACTTGTTCAAATCATGATCTCGACTATCAGTTTGTGGACCAGGCAAGTTCTCCTAAGAGCACTTTTTTGTTTATCTTAGTGTTGTGTAACTGCTAG

Protein Analysis

119

Amino Acids

13.58

Weight (kDa)

4.24

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 67, 177
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 3 cut(s) 98, 257, 273
AjnI CCWGG 2 cut(s) 44, 303
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 326
AlwI GGATC 2 cut(s) 67, 177
ApeKI GCWGC 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspS9I GGNCC 1 cut(s) 301
AvaII GGWCC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 2 cut(s) 46, 305
BfaI CTAG 1 cut(s) 358
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 46, 305
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 46, 305
BmrI ACTGGG 2 cut(s) 122, 218
BmuI ACTGGG 2 cut(s) 122, 218
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 117, 224
BseBI CCWGG 2 cut(s) 46, 305
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 117, 224
BseRI GAGGAG 2 cut(s) 167, 264
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 3 cut(s) 59, 169, 280
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 2 cut(s) 67, 177
BsrI ACTGG 2 cut(s) 117, 224
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 59, 169, 280
Bst2UI CCWGG 2 cut(s) 46, 305
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 4 cut(s) 150, 245, 318, 340
BstKTI GATC 3 cut(s) 62, 172, 283
BstMBI GATC 3 cut(s) 59, 169, 280
BstNI CCWGG 2 cut(s) 46, 305
BstSCI CCNGG 2 cut(s) 44, 303
BstV1I GCAGC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 125
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 208, 278
CviJI RGCY 3 cut(s) 127, 215, 263
CviKI_1 RGCY 3 cut(s) 127, 215, 263
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 4 cut(s) 150, 245, 318, 340
DpnI GATC 3 cut(s) 61, 171, 282
DpnII GATC 3 cut(s) 59, 169, 280
Eco47I GGWCC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 44, 303
FaeI CATG 2 cut(s) 211, 281
FaiI YATR 8 cut(s) 42, 77, 84, 86, 203, 209, 231, 279
FatI CATG 2 cut(s) 207, 277
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 358
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 219
Hin1II CATG 2 cut(s) 211, 281
HinfI GANTC 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 180, 301
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 5 cut(s) 98, 139, 257, 278, 284
Hpy8I GTNNAC 2 cut(s) 180, 301
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 4 cut(s) 150, 245, 318, 340
Hsp92II CATG 2 cut(s) 211, 281
Kzo9I GATC 3 cut(s) 59, 169, 280
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 11, 350
MalI GATC 3 cut(s) 61, 171, 282
MboI GATC 3 cut(s) 59, 169, 280
MhlI GDGCHC 1 cut(s) 326
MnlI CCTC 4 cut(s) 145, 148, 242, 253
MseI TTAA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 46, 305
MvaI CCWGG 2 cut(s) 46, 305
NdeII GATC 3 cut(s) 59, 169, 280
NlaIII CATG 2 cut(s) 211, 281
NlaIV GGNNCC 1 cut(s) 221
PagI TCATGA 1 cut(s) 277
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 44, 303
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 44, 303
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 59, 169, 280
Sau96I GGNCC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 46, 305
SduI GDGCHC 1 cut(s) 326
SetI ASST 2 cut(s) 95, 217
SinI GGWCC 1 cut(s) 301
SspMI CTAG 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 44, 303
TaqI TCGA 1 cut(s) 285
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 231
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 301
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.