Rh2BG254700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
26334413 .. 26334932
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG254700.1

Sequence Viewer

Length: 453 bp
ATGGCCATTTTAGGCTGGCTAGTCCAACTGAAGTACACATCTGCCACTGCATCTCCATTCGACACCGACTATGTTACCATTCGGATGTTTATAGTCGCTTTCTTGGTTTACTTTGGGTTCTTGACTCCGGAGATATTATTAGCTCATGCTCCCAATTCAGATTTGGGGGAGTTCATCAACAACATTATCTTCTTGTTCGGAACTCTTGCCTCGTTCTTGCTACTGCTTATCCTCGTTCGAGCTTTCGGGTTGCTCGCCCTCCTTTTTTGGACGATTTATTTTGTGAGGGATGTTACAACTAAGAAGTCGTACAGGAATGCAGTTTGTGACGTCTTCAACAAAGTAAAAGAGATAATTAATGGTCACTTGGTGGAGATTAATGGTGTACAACTCCAACCCCCACCACATATCGTTGTACAAATCCAAGATGCGGGAGAACCGAACGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

5.83

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 330
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 4 cut(s) 35, 311, 387, 417
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 2 cut(s) 143, 242
AluI AGCT 2 cut(s) 143, 242
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 2 cut(s) 357, 378
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 325
BfaI CTAG 1 cut(s) 20
BmsI GCATC 2 cut(s) 59, 418
BpiI GAAGAC 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 430
BseAI TCCGGA 1 cut(s) 127
BseGI GGATG 2 cut(s) 90, 295
BseLI CCNNNNNNNGG 1 cut(s) 430
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 430
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 127
Bsp1407I TGTACA 2 cut(s) 385, 415
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 127
BsrGI TGTACA 2 cut(s) 385, 415
BssNI GRCGYC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 330
BstAUI TGTACA 2 cut(s) 385, 415
BstC8I GCNNGC 2 cut(s) 17, 255
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 90, 295
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 90, 295
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 17, 255
Csp6I GTAC 4 cut(s) 34, 310, 386, 416
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 5, 15, 19, 143, 242
CviKI_1 RGCY 5 cut(s) 5, 15, 19, 143, 242
CviQI GTAC 4 cut(s) 34, 310, 386, 416
DdeI CTNAG 1 cut(s) 300
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 72, 92, 147, 408
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 424
FokI GGATG 2 cut(s) 97, 302
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 1 cut(s) 149
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 36, 109, 386
Hpy188I TCNGA 3 cut(s) 84, 160, 200
Hpy188III TCNNGA 2 cut(s) 121, 128
Hpy8I GTNNAC 3 cut(s) 36, 109, 386
HpyCH4IV ACGT 2 cut(s) 330, 444
HpyCH4V TGCA 2 cut(s) 50, 320
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 330, 444
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 127
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 2 cut(s) 141, 298
LweI GCATC 2 cut(s) 59, 418
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 330, 444
MaeIII GTNAC 4 cut(s) 73, 292, 326, 362
MboII GAAGA 2 cut(s) 181, 325
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 154, 354
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 49, 418
MnlI CCTC 4 cut(s) 220, 242, 269, 279
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 357, 378
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 326, 362
PctI GAATGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PshBI ATTAAT 2 cut(s) 357, 378
Psp1406I AACGTT 1 cut(s) 444
RsaI GTAC 4 cut(s) 35, 311, 387, 417
RsaNI GTAC 4 cut(s) 34, 310, 386, 416
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 357, 378
SchI GAGTC 1 cut(s) 118
SetI ASST 4 cut(s) 145, 244, 333, 447
SfaNI GCATC 2 cut(s) 59, 418
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 2 cut(s) 154, 354
SsiI CCGC 1 cut(s) 431
SspMI CTAG 1 cut(s) 20
TaiI ACGT 2 cut(s) 333, 447
TaqI TCGA 2 cut(s) 60, 238
TasI AATT 2 cut(s) 154, 354
TatI WGTACW 3 cut(s) 33, 385, 415
Tru1I TTAA 2 cut(s) 357, 378
Tru9I TTAA 2 cut(s) 357, 378
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 326, 362
Tsp45I GTSAC 2 cut(s) 326, 362
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 2 cut(s) 357, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 20
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.