Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36111805 .. 36112923

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47722.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGAGAGACGGCCACAACAATGCCAGTGCAAGACTACACAGCACCAACACAACAGGGCAGGGTGCATCTCAGACAAATTATATAGTAGCATCGCATACATTTATACTTGCTCTCATCGCCATCTTAGGCTTCTCCATCCAATTGAAGTTTCCCGATGGGTCTCCTTATGCAACAGTCTACGGCACTCGCCTGATGAACACATTCATTATTGTGACCTGCACTTACATCATCTCCTTAATTGTGATGGGAATCTCAGCTCGTCGCGATAATGCAGATTTGGAAGATCTCATGAACAAAATTTGCCTCTTCTTTGGAACCCTGCCCGTGATCTTAGAATTGCTTGTCCTCATCAAAACTTTTGGATGGTTTATAAGCTTCATCTTGAGCATCTGCCTTTTATGCTTCATGTGTAAGTATCACCAGTCTCTGCTAACACTCTGGAACAATGCAGTTGAACGTCTTGTTCAAGCCTTCAGAGAATTCAGACAGACGCTGAAAGATTGGAGCAGCGGCATGAGGACTAAACATGATGAAGTGGAAAAGATGAGCATCAGCAATCTCAAGCGCGCAATTGAGCTTCAGCCCCAGAATCGGAACGTGAGCATTAAGAGGCGAGCTACAGAGCATCAATCCCAGAACCAGAATCACACCACCGTGACAGAGCATGCAATAGCTATACCTGATAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

232

Amino Acids

26.23

Weight (kDa)

9.18

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	267, 570
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	300, 482
AcuI	CTGAAG	2 cut(s)	460, 566
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgsI	TTSAA	3 cut(s)	148, 458, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	5 cut(s)	260, 378, 580, 620, 677
AluI	AGCT	5 cut(s)	260, 378, 580, 620, 677
Alw26I	GTCTC	3 cut(s)	3, 168, 432
AlwNI	CAGNNNCTG	2 cut(s)	430, 496
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	2 cut(s)	300, 482
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	570, 572
AsuHPI	GGTGA	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	5 cut(s)	131, 146, 152, 241, 360
BceAI	ACGGC	2 cut(s)	28, 199
BcoDI	GTCTC	3 cut(s)	3, 168, 432
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	2 cut(s)	511, 514
BlsI	GCNGC	2 cut(s)	512, 515
BmiI	GGNNCC	1 cut(s)	319
BmsI	GCATC	5 cut(s)	77, 101, 399, 561, 637
BpuEI	CTTGAG	2 cut(s)	406, 548
BsaBI	GATNNNNATC	2 cut(s)	251, 551
BsaI	GGTCTC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	27, 424
Bse8I	GATNNNNATC	2 cut(s)	251, 551
BseGI	GGATG	2 cut(s)	138, 371
BseJI	GATNNNNATC	2 cut(s)	251, 551
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	86, 270
BseNI	ACTGG	2 cut(s)	27, 424
BsePI	GCGCGC	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	522
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	2 cut(s)	267, 570
BshFI	GGCC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	3 cut(s)	3, 168, 432
BsmBI	CGTCTC	1 cut(s)	3
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	286, 330
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	85, 269
BspFNI	CGCG	2 cut(s)	267, 570
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	27, 424
BssHII	GCGCGC	1 cut(s)	568
BssMI	GATC	2 cut(s)	286, 330
Bst4CI	ACNGT	2 cut(s)	178, 658
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	570, 618, 669
BstDEI	CTNAG	4 cut(s)	72, 127, 256, 334
BstF5I	GGATG	2 cut(s)	138, 371
BstFNI	CGCG	2 cut(s)	267, 570
BstHHI	GCGC	2 cut(s)	570, 572
BstKTI	GATC	2 cut(s)	289, 333
BstMAI	GTCTC	3 cut(s)	3, 168, 432
BstMBI	GATC	2 cut(s)	286, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 402
BstNSI	RCATGY	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	2 cut(s)	267, 570
BstV1I	GCAGC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	15
BtgZI	GCGATG	2 cut(s)	78, 103
BtsCI	GGATG	2 cut(s)	138, 371
BtsIMutI	CAGTG	1 cut(s)	34
BtuMI	TCGCGA	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	570, 618, 669
CaiI	CAGNNNCTG	2 cut(s)	430, 496
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	2 cut(s)	570, 572
CseI	GACGC	1 cut(s)	502
CviAII	CATG	5 cut(s)	292, 409, 517, 530, 668
CviJI	RGCY	9 cut(s)	15, 132, 260, 378, 473, 580, 586, 620, 677
CviKI_1	RGCY	9 cut(s)	15, 132, 260, 378, 473, 580, 586, 620, 677
DdeI	CTNAG	4 cut(s)	72, 127, 256, 334
DpnI	GATC	2 cut(s)	288, 332
DpnII	GATC	2 cut(s)	286, 330
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	460, 566
EcoRI	GAATTC	1 cut(s)	482
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	5 cut(s)	295, 412, 520, 533, 671
FatI	CATG	5 cut(s)	291, 408, 516, 529, 667
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	511, 514
FokI	GGATG	2 cut(s)	125, 378
Fsp4HI	GCNGC	2 cut(s)	511, 514
GlaI	GCGC	2 cut(s)	569, 571
GluI	GCNGC	2 cut(s)	511, 514
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	502
HhaI	GCGC	2 cut(s)	570, 572
Hin1II	CATG	5 cut(s)	295, 412, 520, 533, 671
Hin6I	GCGC	2 cut(s)	568, 570
HinP1I	GCGC	2 cut(s)	568, 570
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	3 cut(s)	252, 592, 646
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	75, 479, 488, 597
Hpy188III	TCNNGA	6 cut(s)	155, 266, 292, 385, 442, 693
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	178, 658
HpyCH4IV	ACGT	2 cut(s)	460, 600
HpyCH4V	TGCA	7 cut(s)	32, 68, 173, 222, 275, 452, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 402
HpyF3I	CTNAG	4 cut(s)	72, 127, 256, 334
HpySE526I	ACGT	2 cut(s)	460, 600
Hsp92II	CATG	5 cut(s)	295, 412, 520, 533, 671
HspAI	GCGC	2 cut(s)	568, 570
Kzo9I	GATC	2 cut(s)	286, 330
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	5 cut(s)	77, 101, 399, 561, 637
MaeII	ACGT	2 cut(s)	460, 600
MaeIII	GTNAC	2 cut(s)	214, 658
MalI	GATC	2 cut(s)	288, 332
MboI	GATC	2 cut(s)	286, 330
MboII	GAAGA	3 cut(s)	16, 296, 301
MfeI	CAATTG	2 cut(s)	143, 573
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	7 cut(s)	79, 143, 240, 300, 338, 482, 573
MnlI	CCTC	4 cut(s)	317, 359, 513, 606
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	239, 609
MslI	CAYNNNNRTG	3 cut(s)	21, 212, 656
MspA1I	CMGCKG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	143, 573
MvnI	CGCG	2 cut(s)	267, 570
MwoI	GCNNNNNNNGC	2 cut(s)	119, 402
NdeII	GATC	2 cut(s)	286, 330
NlaIII	CATG	5 cut(s)	295, 412, 520, 533, 671
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	214, 658
NruI	TCGCGA	1 cut(s)	267
NspI	RCATGY	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	671
PagI	TCATGA	1 cut(s)	291
PauI	GCGCGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	252, 592, 646
PkrI	GCNGC	2 cut(s)	512, 515
PsiI	TTATAA	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	319
PstNI	CAGNNNCTG	2 cut(s)	430, 496
PsuI	RGATCY	1 cut(s)	286
PteI	GCGCGC	1 cut(s)	568
RruI	TCGCGA	1 cut(s)	267
RseI	CAYNNNNRTG	3 cut(s)	21, 212, 656
SaqAI	TTAA	2 cut(s)	239, 609
SatI	GCNGC	2 cut(s)	511, 514
Sau3AI	GATC	2 cut(s)	286, 330
SetI	ASST	9 cut(s)	221, 262, 380, 463, 582, 603, 622, 679, 685
SfaNI	GCATC	5 cut(s)	77, 101, 399, 561, 637
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	3 cut(s)	21, 212, 656
SmlI	CTYRAG	2 cut(s)	385, 563
SmoI	CTYRAG	2 cut(s)	385, 563
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	7 cut(s)	79, 143, 240, 300, 338, 482, 573
SsiI	CCGC	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	178, 658
TaiI	ACGT	2 cut(s)	463, 603
TasI	AATT	7 cut(s)	79, 143, 240, 300, 338, 482, 573
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	3 cut(s)	252, 592, 646
Tru1I	TTAA	2 cut(s)	239, 609
Tru9I	TTAA	2 cut(s)	239, 609
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	2 cut(s)	214, 658
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	2 cut(s)	214, 658
TspDTI	ATGAA	7 cut(s)	17, 196, 212, 308, 370, 397, 549
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	300, 482
XceI	RCATGY	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.