Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

12851375 .. 12852498

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGAGTGCCAGCCACCAGAAGGCCAATGCAAGACTCGGGACCACAAGGAGGGAGAGTGCTCCTCGGGGATATTCTATGATGATATTGCTGGCATTGCACGGATTCATGTTTTCTCTCATCGGAGTCTTAGGCGGCCACCTCCAACTCAAGTTTCCAGATGTGTCTACAAATGCGACCGCCTACGGCACTGTGATGATGGGCCTCTTCATTATTGAGACATGCCTTTACATCGTCTCCTTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAATACAGAGTTCGTCGATTTGATGAACAATATTTCCCTCTTTCTTGGAAGTCTGTCCGTGATTATAGAGTTGCTCGTCCTTTTTTCGACTTTCGGATGGATTGCACTCTTCTTCTGGAGCATCTGCCTTTTATGCTTCGTGAGTAAGTATTACAAGTCGCTGAAAAAACTCTACCAACGTGCGGTTGCACATCTTGTTCGAGACTTTGGAGAATTGAAACAGAACCTGGTTGATTTGAATCGCCGCTTGATGGACAGTAATGCAATTGCAGCACTTGGTCCTGCCTATCAGACATTGAAGGACCTGATCATCAGGAATGACGGGCGCATTACAGGGCATGAAGCCCAGAACCAAAACCAGAACCACACCACTGAGCTACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

219

Amino Acids

24.49

Weight (kDa)

9.03

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	4 cut(s)	135, 180, 455, 517
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	4 cut(s)	22, 51, 454, 523
AgsI	TTSAA	3 cut(s)	490, 511, 571
AjnI	CCWGG	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	2 cut(s)	263, 649
AluI	AGCT	2 cut(s)	263, 649
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	3 cut(s)	212, 241, 468
AlwNI	CAGNNNCTG	1 cut(s)	499
Ama87I	CYCGRG	2 cut(s)	38, 66
AoxI	GGCC	3 cut(s)	24, 136, 202
ApeKI	GCWGC	2 cut(s)	263, 542
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	4 cut(s)	42, 202, 551, 574
AvaI	CYCGRG	2 cut(s)	38, 66
AvaII	GGWCC	3 cut(s)	42, 551, 574
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	250, 554
BccI	CCATC	4 cut(s)	193, 244, 363, 517
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	3 cut(s)	212, 241, 468
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	4 cut(s)	136, 264, 517, 543
BlsI	GCNGC	4 cut(s)	137, 265, 518, 544
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	3 cut(s)	42, 551, 574
BmeT110I	CYCGRG	2 cut(s)	38, 66
BmgT120I	GGNCC	4 cut(s)	42, 202, 551, 574
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	2 cut(s)	254, 510
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 221, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 51, 454, 523
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	254, 510
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	374
BseJI	GATNNNNATC	2 cut(s)	254, 510
BseLI	CCNNNNNNNGG	4 cut(s)	22, 51, 454, 523
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	636
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	250, 554
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	26, 138, 204
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	2 cut(s)	38, 66
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	22, 51, 454, 523
BsmAI	GTCTC	3 cut(s)	212, 241, 468
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	26, 138, 204
BsoBI	CYCGRG	2 cut(s)	38, 66
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	579
BspACI	CCGC	4 cut(s)	135, 180, 455, 517
BspANI	GGCC	3 cut(s)	26, 138, 204
BspCNI	CTCAG	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	193, 530
Bst6I	CTCTTC	2 cut(s)	212, 386
BstC8I	GCNNGC	3 cut(s)	13, 93, 268
BstDEI	CTNAG	3 cut(s)	130, 241, 645
BstF5I	GGATG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	1 cut(s)	582
BstMAI	GTCTC	3 cut(s)	212, 241, 468
BstMBI	GATC	1 cut(s)	579
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 405, 542
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	250, 554
BsuRI	GGCC	3 cut(s)	26, 138, 204
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	189, 642
Cac8I	GCNNGC	3 cut(s)	13, 93, 268
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	4 cut(s)	42, 202, 551, 574
CsiI	ACCWGGT	1 cut(s)	498
CviAII	CATG	3 cut(s)	109, 222, 611
CviJI	RGCY	7 cut(s)	15, 26, 138, 204, 263, 617, 649
CviKI_1	RGCY	7 cut(s)	15, 26, 138, 204, 263, 617, 649
DdeI	CTNAG	3 cut(s)	130, 241, 645
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	212, 386
EarI	CTCTTC	2 cut(s)	212, 386
Eco47I	GGWCC	3 cut(s)	42, 551, 574
Eco88I	CYCGRG	2 cut(s)	38, 66
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	3 cut(s)	112, 225, 614
FaiI	YATR	6 cut(s)	80, 110, 223, 338, 406, 612
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	108, 221, 610
FbaI	TGATCA	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	136, 264, 517, 543
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	136, 264, 517, 543
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	4 cut(s)	136, 264, 517, 543
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	26, 138, 204
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	112, 225, 614
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	5 cut(s)	36, 105, 126, 255, 511
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	3 cut(s)	125, 368, 564
Hpy188III	TCNNGA	6 cut(s)	40, 158, 388, 412, 473, 586
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	16, 565
HpyCH4III	ACNGT	2 cut(s)	193, 530
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	6 cut(s)	32, 100, 377, 461, 536, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 405, 542
HpyF3I	CTNAG	3 cut(s)	130, 241, 645
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	112, 225, 614
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	2 cut(s)	67, 390
Lsp1109I	GCAGC	2 cut(s)	250, 554
LweI	GCATC	1 cut(s)	402
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	451
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MboII	GAAGA	3 cut(s)	199, 373, 376
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	485, 537
MlyI	GAGTC	2 cut(s)	30, 135
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	45, 75, 152, 215, 320
MseI	TTAA	1 cut(s)	658
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	97, 405, 542
NdeII	GATC	1 cut(s)	579
NlaIII	CATG	3 cut(s)	112, 225, 614
NlaIV	GGNNCC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	105, 255, 511
PkrI	GCNGC	4 cut(s)	137, 265, 518, 544
PleI	GAGTC	2 cut(s)	30, 134
PpsI	GAGTC	2 cut(s)	30, 134
PpuMI	RGGWCCY	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	4 cut(s)	42, 202, 551, 574
PspPPI	RGGWCCY	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	4 cut(s)	136, 264, 517, 543
Sau3AI	GATC	1 cut(s)	579
Sau96I	GGNCC	4 cut(s)	42, 202, 551, 574
SchI	GAGTC	2 cut(s)	30, 135
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	144, 265, 454, 501, 579, 651, 655
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	402
SinI	GGWCC	3 cut(s)	42, 551, 574
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	485, 537
SsiI	CCGC	4 cut(s)	135, 180, 455, 517
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	193, 530
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	288, 359, 472
TasI	AATT	2 cut(s)	485, 537
TauI	GCSGC	2 cut(s)	138, 519
TfiI	GAWTC	3 cut(s)	105, 255, 511
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	2 cut(s)	196, 649
TseI	GCWGC	2 cut(s)	263, 542
TspDTI	ATGAA	4 cut(s)	97, 199, 311, 627
TspGWI	ACGGA	2 cut(s)	117, 319
TspRI	CASTG	2 cut(s)	196, 649
VpaK11BI	GGWCC	3 cut(s)	42, 551, 574
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.