Rroxscaffold_1G00012720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000247
Physical Location & Seq
Forward (+)
15586083 .. 15586706
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012720.1

Sequence Viewer

Length: 624 bp
ATGCCAAGGGAGGTGCGCCCTAGCATTTCTATAGAGGGAGTGCACAAAGGGATATTCCTTCTGATCGCCATTCTAGGCTGCCTCCTCCCACTGAAACAAGGACCCAAAGATGCCCCTCTATTGGTCACCCACTACAGCACTATGCTCACCTTTACTGTCGTCTTATTCCTTTATATCGGATCACTGACGAGTATCTTTGTCAGGAGACTCCAAGCTCCAATCAACTTAGATCCGGCATCTCAATTCATGAACAAGATCAGCATCTTGCTTGGAACTCTTGCTTCCTTTTTACTATTCTTCATCCTCTCTCCACTTGTTTGGCGGTTTGCCCTCTTCTTATGGACTATTTGGTTTCTAAGGGATCTAATAATGTCCTACCAATACTTAAAATCAGTATATCACAGTGCAGCAGCAGGCCTTGTTCTTACGTTTGACAGACTTAAGGAGATAATCATTGTTGTGGGTGGCTCCTTGGTGAAATATTTGAAAACATTGTATGCTGGGGCAGGTGCAGTGCTTGTTCATACCTTTAACAATTTGAAGGAGTTTATCACAATCGTTAGAAATTGCCACTTCACAGAGCAGGAAGCTGAGGACCTGAACAATGGCCTACCTGCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.26

Weight (kDa)

9.3

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AciI CCGC 1 cut(s) 322
AclWI GGATC 3 cut(s) 187, 224, 369
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 487, 541
AluBI AGCT 2 cut(s) 215, 590
AluI AGCT 2 cut(s) 215, 590
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 41
AlwI GGATC 3 cut(s) 187, 224, 369
AoxI GGCC 2 cut(s) 415, 607
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 78, 407, 410
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 101, 595
AsuHPI GGTGA 3 cut(s) 118, 139, 487
AvaII GGWCC 2 cut(s) 101, 595
BaeGI GKGCMC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 65, 419, 422
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 21, 74
BfmI CTRYAG 3 cut(s) 30, 133, 615
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 3 cut(s) 79, 408, 411
BlsI GCNGC 3 cut(s) 80, 409, 412
Bme18I GGWCC 2 cut(s) 101, 595
BmgT120I GGNCC 2 cut(s) 101, 595
BmiI GGNNCC 2 cut(s) 103, 469
BmsI GCATC 3 cut(s) 100, 245, 270
Bpu10I CCTNAGC 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 5, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 5, 471
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 65, 419, 422
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 2 cut(s) 426, 531
BshFI GGCC 2 cut(s) 417, 609
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 417, 609
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 5 cut(s) 63, 179, 229, 255, 361
BspACI CCGC 1 cut(s) 322
BspANI GGCC 2 cut(s) 417, 609
BspCNI CTCAG 1 cut(s) 583
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 103, 469
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 3 cut(s) 187, 224, 369
BspTI CTTAAG 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 5, 471
BssMI GATC 5 cut(s) 63, 179, 229, 255, 361
BssT1I CCWWGG 2 cut(s) 5, 471
Bst4CI ACNGT 2 cut(s) 157, 404
Bst6I CTCTTC 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 3 cut(s) 226, 356, 591
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 5 cut(s) 66, 182, 232, 258, 364
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 5 cut(s) 63, 179, 229, 255, 361
BstPI GGTNACC 1 cut(s) 124
BstSFI CTRYAG 3 cut(s) 30, 133, 615
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 65, 419, 422
BstX2I RGATCY 2 cut(s) 229, 361
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 2 cut(s) 229, 361
BsuRI GGCC 2 cut(s) 417, 609
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 4 cut(s) 89, 182, 409, 519
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 415
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 101, 595
CviAII CATG 1 cut(s) 247
CviJI RGCY 6 cut(s) 78, 215, 417, 468, 590, 609
CviKI_1 RGCY 6 cut(s) 78, 215, 417, 468, 590, 609
DdeI CTNAG 3 cut(s) 226, 356, 591
DpnI GATC 5 cut(s) 65, 181, 231, 257, 363
DpnII GATC 5 cut(s) 63, 179, 229, 255, 361
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 2 cut(s) 5, 471
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 101, 595
Eco91I GGTNACC 1 cut(s) 124
EcoO109I RGGNCCY 2 cut(s) 101, 595
EcoO65I GGTNACC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 5, 471
ErhI CCWWGG 2 cut(s) 5, 471
FaeI CATG 1 cut(s) 250
FaiI YATR 8 cut(s) 32, 143, 174, 248, 340, 397, 498, 525
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 79, 408, 411
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 79, 408, 411
FspBI CTAG 2 cut(s) 21, 74
GlaI GCGC 1 cut(s) 17
GluI GCNGC 3 cut(s) 79, 408, 411
GsaI CCCAGC 1 cut(s) 504
HaeIII GGCC 2 cut(s) 417, 609
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 233
HphI GGTGA 3 cut(s) 118, 139, 487
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 63, 179
Hpy188III TCNNGA 2 cut(s) 202, 247
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 68, 535
HpyCH4III ACNGT 2 cut(s) 157, 404
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 4 cut(s) 43, 407, 512, 617
HpyF3I CTNAG 3 cut(s) 226, 356, 591
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 63, 179, 229, 255, 361
LmnI GCTCC 2 cut(s) 220, 473
LpnPI CCDG 7 cut(s) 187, 246, 399, 486, 492, 569, 611
Lsp1109I GCAGC 3 cut(s) 65, 419, 422
LweI GCATC 3 cut(s) 100, 245, 270
MaeI CTAG 2 cut(s) 21, 74
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 124
MalI GATC 5 cut(s) 65, 181, 231, 257, 363
MboI GATC 5 cut(s) 63, 179, 229, 255, 361
MboII GAAGA 2 cut(s) 289, 325
MflI RGATCY 2 cut(s) 229, 361
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 242, 535, 565
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 8 cut(s) 4, 28, 92, 95, 126, 314, 341, 586
MseI TTAA 4 cut(s) 386, 441, 531, 622
MslI CAYNNNNRTG 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 233
NdeII GATC 5 cut(s) 63, 179, 229, 255, 361
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 103, 469
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 1 cut(s) 246
PaqCI CACCTGC 1 cut(s) 497
PceI AGGCCT 1 cut(s) 417
PkrI GCNGC 3 cut(s) 80, 409, 412
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PpuMI RGGWCCY 2 cut(s) 101, 595
Psp5II RGGWCCY 2 cut(s) 101, 595
PspEI GGTNACC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 500
PspN4I GGNNCC 2 cut(s) 103, 469
PspPI GGNCC 2 cut(s) 101, 595
PspPPI RGGWCCY 2 cut(s) 101, 595
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 2 cut(s) 229, 361
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 4 cut(s) 386, 441, 531, 622
SatI GCNGC 3 cut(s) 79, 408, 411
Sau3AI GATC 5 cut(s) 63, 179, 229, 255, 361
Sau96I GGNCC 2 cut(s) 101, 595
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 45
SetI ASST 9 cut(s) 15, 152, 217, 431, 511, 530, 592, 600, 616
SfaNI GCATC 3 cut(s) 100, 245, 270
SfcI CTRYAG 3 cut(s) 30, 133, 615
SinI GGWCC 2 cut(s) 101, 595
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 242, 535, 565
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 322
SspI AATATT 1 cut(s) 482
SspMI CTAG 2 cut(s) 21, 74
StuI AGGCCT 1 cut(s) 417
StyI CCWWGG 2 cut(s) 5, 471
TaaI ACNGT 2 cut(s) 157, 404
TaiI ACGT 1 cut(s) 431
TasI AATT 3 cut(s) 242, 535, 565
Tru1I TTAA 4 cut(s) 386, 441, 531, 622
Tru9I TTAA 4 cut(s) 386, 441, 531, 622
TscAI CASTG 4 cut(s) 96, 189, 409, 519
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 78, 407, 410
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 235, 263, 289, 512
TspRI CASTG 4 cut(s) 96, 189, 409, 519
Vha464I CTTAAG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 101, 595
XspI CTAG 2 cut(s) 21, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.