Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

73150750 .. 73152452

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCCAAAACAAAATCAAAATTGTGAAAGACACATTTCTATAGGGGGAGTGCACAAAGGGATATCCCTTCTGATCACCAGTCTAGGATGCCTCCTCCCACTGACACAAGGACCCAAAGATGCGCCTCTATTGGTCACTCACTACAGTGCTATCCTCACATTTACTGTCGTTTTATTCCTTTATATCGGGTCACTGACGAGTATCTTTGTTAGGAGACTCCAAGCTCCAATCAACTTCGATCCAGCAGCTCAATTCATGAACAAGATCAGCATCTTGCTTGGAACTCTTGCTTCCCTTTTACTATTCTTCATCCTCTTTCCACTTGTTGGGCGGTTTGCCCTCTTCTTATGGACTATTTGGTTTTTAAGGGACATAACAATGTCCTACCAGTACTTAAAATCAGTCTATCAAAATGCAGCCGCAAGACTTGTTCGTACCTTTGACAGACTGAAGGAGATGATCATTGTTGTGGGTGGCCACTTGGTGGAGTATTTGAAAAGATTGTATGCTGGTGCAGTTTCAATGCTTGTTCATACCTTCAACAATTTGAAAGAGCTTATCACAATCGTGATAAATGGCCGCTTCATAGAGCAGGAAGCTGAGGACTGGAACAATGGCCTACCTGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

210

Amino Acids

23.73

Weight (kDa)

9.48

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	326, 484
AciI	CCGC	3 cut(s)	331, 420, 580
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	475, 577
AcuI	CTGAAG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	2 cut(s)	392, 436
AfiI	CCNNNNNNNGG	2 cut(s)	326, 484
AgsI	TTSAA	4 cut(s)	496, 522, 541, 550
AleI	CACNNNNGTG	2 cut(s)	144, 566
AluBI	AGCT	4 cut(s)	224, 248, 556, 599
AluI	AGCT	4 cut(s)	224, 248, 556, 599
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	3 cut(s)	475, 577, 616
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	245, 416
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	257, 428
BclI	TGATCA	2 cut(s)	72, 459
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	3 cut(s)	39, 142, 624
BisI	GCNGC	4 cut(s)	246, 417, 420, 580
BlsI	GCNGC	4 cut(s)	247, 418, 421, 581
BmcAI	AGTACT	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	77, 109, 279
Bpu10I	CCTNAGC	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 484
Bse1I	ACTGG	3 cut(s)	78, 388, 611
Bse8I	GATNNNNATC	1 cut(s)	269
BseGI	GGATG	2 cut(s)	92, 309
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	326, 484
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	3 cut(s)	78, 388, 611
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	257, 428
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	477, 579, 618
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	326, 484
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	477, 579, 618
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	72, 238, 264, 459
BspACI	CCGC	3 cut(s)	331, 420, 580
BspANI	GGCC	3 cut(s)	477, 579, 618
BspCNI	CTCAG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	78, 388, 611
BssMI	GATC	4 cut(s)	72, 238, 264, 459
Bst4CI	ACNGT	2 cut(s)	146, 166
Bst6I	CTCTTC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	92, 309
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	75, 241, 267, 462
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	4 cut(s)	72, 238, 264, 459
BstSFI	CTRYAG	3 cut(s)	39, 142, 624
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	257, 428
BsuRI	GGCC	3 cut(s)	477, 579, 618
BtsCI	GGATG	2 cut(s)	92, 309
BtsIMutI	CAGTG	3 cut(s)	98, 151, 191
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	391, 435
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	8 cut(s)	224, 248, 419, 477, 556, 579, 599, 618
CviKI_1	RGCY	8 cut(s)	224, 248, 419, 477, 556, 579, 599, 618
CviQI	GTAC	2 cut(s)	391, 435
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	4 cut(s)	74, 240, 266, 461
DpnII	GATC	4 cut(s)	72, 238, 264, 459
DraIII	CACNNNGTG	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	475, 577
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	63
FaeI	CATG	1 cut(s)	259
FaiI	YATR	8 cut(s)	41, 183, 257, 349, 374, 507, 534, 587
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	2 cut(s)	72, 459
Fnu4HI	GCNGC	4 cut(s)	246, 417, 420, 580
FokI	GGATG	2 cut(s)	99, 296
Fsp4HI	GCNGC	4 cut(s)	246, 417, 420, 580
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	246, 417, 420, 580
HaeIII	GGCC	3 cut(s)	477, 579, 618
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	1 cut(s)	216
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	256, 568
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	77, 445, 547
HpyCH4III	ACNGT	2 cut(s)	146, 166
HpyCH4V	TGCA	4 cut(s)	52, 416, 515, 626
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	2 cut(s)	72, 459
Kzo9I	GATC	4 cut(s)	72, 238, 264, 459
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	91, 255, 401, 495, 578, 592
Lsp1109I	GCAGC	2 cut(s)	257, 428
LweI	GCATC	3 cut(s)	77, 109, 279
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	133, 189
MalI	GATC	4 cut(s)	74, 240, 266, 461
MboI	GATC	4 cut(s)	72, 238, 264, 459
MboII	GAAGA	2 cut(s)	298, 334
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	3 cut(s)	19, 251, 544
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	101, 104, 135, 164, 323, 350, 595
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	365, 395, 631
MslI	CAYNNNNRTG	4 cut(s)	144, 377, 467, 566
Msp20I	TGGCCA	1 cut(s)	477
NdeII	GATC	4 cut(s)	72, 238, 264, 459
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	133, 189
OliI	CACNNNNGTG	2 cut(s)	144, 566
PagI	TCATGA	1 cut(s)	255
PflMI	CCANNNNNTGG	2 cut(s)	326, 484
PkrI	GCNGC	4 cut(s)	247, 418, 421, 581
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	628
RsaI	GTAC	2 cut(s)	392, 436
RsaNI	GTAC	2 cut(s)	391, 435
RseI	CAYNNNNRTG	4 cut(s)	144, 377, 467, 566
SaqAI	TTAA	3 cut(s)	365, 395, 631
SatI	GCNGC	4 cut(s)	246, 417, 420, 580
Sau3AI	GATC	4 cut(s)	72, 238, 264, 459
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	226, 250, 440, 539, 558, 601, 625
SfaNI	GCATC	3 cut(s)	77, 109, 279
SfcI	CTRYAG	3 cut(s)	39, 142, 624
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	4 cut(s)	144, 377, 467, 566
Sse9I	AATT	3 cut(s)	19, 251, 544
SsiI	CCGC	3 cut(s)	331, 420, 580
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	146, 166
TaqI	TCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	19, 251, 544
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	422, 582
Tru1I	TTAA	3 cut(s)	365, 395, 631
Tru9I	TTAA	3 cut(s)	365, 395, 631
TscAI	CASTG	3 cut(s)	105, 151, 198
TseFI	GTSAC	2 cut(s)	133, 189
TseI	GCWGC	2 cut(s)	245, 416
Tsp45I	GTSAC	2 cut(s)	133, 189
TspDTI	ATGAA	5 cut(s)	244, 272, 298, 521, 574
TspRI	CASTG	3 cut(s)	105, 151, 198
Van91I	CCANNNNNTGG	2 cut(s)	326, 484
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.