Prupe.3G260800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000247
Physical Location & Seq
Reverse (-)
24697902 .. 24699649
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G260800.1

Sequence Viewer

Length: 471 bp
ATGCCCAGTTGCAACACAAGCAGAGAACCTTCTATAAGGGCATTCCACAAATATATATGTTTTGTCATCACCATTCTAGCTGTGTTCCTCCAACTGAAACAAGAATCTGGAACGATATCTTTGTTTGATGCAGACTACCCGTCTTTTGTGATACTTATTGTTGCTATAATCATTTACGGATGGTCATTAATTGGCGGCACATATATACGCCAAGCTCACCTTAATTCAGATTTGGCCAAATTTATAGACAATATTAGCCTTCTTTCTGGAGCTCTTGCCTTGGTTTTGGAATTGGTGATCCTTGTTCCGGCTTTAGGGTTATTTACCCTCCTCTTCTGGATCGTTTGTTTTGTGAGTTTTATAGCTGTTTACTCGTACCCATACCTCAAAACATTGTTTACAAGGACAGTCGGAGGAGTTGTTCACGCCTTTGAAAAATTGAGAGAGTATTTGCCCTCTACTTCGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

7.72

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 2 cut(s) 292, 347
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 239
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 307, 314
AgsI TTSAA 1 cut(s) 434
AhdI GACNNNNNGTC 1 cut(s) 139
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
AluBI AGCT 4 cut(s) 80, 215, 272, 365
AluI AGCT 4 cut(s) 80, 215, 272, 365
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 2 cut(s) 292, 347
AoxI GGCC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 239
AseI ATTAAT 1 cut(s) 188
AsuHPI GGTGA 3 cut(s) 61, 209, 307
BalI TGGCCA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 1 cut(s) 174
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmeRI GACNNNNNGTC 1 cut(s) 139
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 314
Bse1I ACTGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 307, 314
BseNI ACTGG 1 cut(s) 6
BseRI GAGGAG 2 cut(s) 320, 429
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 307, 314
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 2 cut(s) 297, 339
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 236
BspPI GGATC 2 cut(s) 292, 347
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 297, 339
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 338
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 2 cut(s) 300, 342
BstMBI GATC 2 cut(s) 297, 339
BstMWI GCNNNNNNNGC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 185
Csp6I GTAC 1 cut(s) 376
CviJI RGCY 7 cut(s) 80, 215, 236, 258, 272, 311, 365
CviKI_1 RGCY 7 cut(s) 80, 215, 236, 258, 272, 311, 365
CviQI GTAC 1 cut(s) 376
DpnI GATC 2 cut(s) 299, 341
DpnII GATC 2 cut(s) 297, 339
DriI GACNNNNNGTC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 338
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 272
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 279
FalI AAGNNNNNCTT 2 cut(s) 204, 236
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 308
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 308
HphI GGTGA 3 cut(s) 61, 209, 307
Hpy166II GTNNAC 3 cut(s) 370, 399, 424
Hpy188I TCNGA 2 cut(s) 229, 413
Hpy188III TCNNGA 3 cut(s) 108, 267, 337
Hpy8I GTNNAC 3 cut(s) 370, 399, 424
HpyAV CCTTC 2 cut(s) 39, 269
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 12, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 297, 339
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 19, 93, 252, 321, 322
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 77
MalI GATC 2 cut(s) 299, 341
MboI GATC 2 cut(s) 297, 339
MboII GAAGA 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 5 cut(s) 189, 223, 239, 290, 437
MluNI TGGCCA 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 115, 391
MnlI CCTC 6 cut(s) 98, 338, 341, 395, 407, 466
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 188, 222
Msp20I TGGCCA 1 cut(s) 236
MspI CCGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 2 cut(s) 297, 339
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 274
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 188, 222
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 297, 339
SduI GDGCHC 1 cut(s) 274
SetI ASST 7 cut(s) 31, 82, 217, 222, 274, 367, 387
SfaNI GCATC 1 cut(s) 118
Sse9I AATT 5 cut(s) 189, 223, 239, 290, 437
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 253
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 274
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 409
TasI AATT 5 cut(s) 189, 223, 239, 290, 437
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 188, 222
Tru9I TTAA 2 cut(s) 188, 222
TspGWI ACGGA 1 cut(s) 192
VspI ATTAAT 1 cut(s) 188
XapI RAATTY 1 cut(s) 239
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.