pycom09g03820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000247
Physical Location & Seq
Reverse (-)
2835977 .. 2836916
940 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03820.1

Sequence Viewer

Length: 513 bp
ATGAACGTCGGAACTTCTCCACAAATCTCAGCTGGCAGCACTATGGAGGAGGGTGGTCGGTACAAATCTCCACCGGCAGCACACAAATGTATATTCCATCTCCTCAACATCCTAGGATTTCTCCTCCAGGTGAAGCATGCGACCGGAAATTTACCGTCTCCATTTGTCACAGACCACAACACTGTTGTGATGTTGATTGCTGATTTACTCACTTACGCGGGGACATTGCAGACTGCCAACATTCTCCAAGCTTCCAACAGTATAAATATATATGAACTCATGAACAACATCAGCCTCTTGTGTGGAACTCTTGCGTTGGTGCTACTGGTGCTCCTCCTCGTTCCAGCCTTCGGGTGGTTTACTCTTACATGTTGGGCCGTATATTTTGCGATAATTGGGACCAAATCCTACCAAACGCTAAGAACACTGTGTACTGACGCTGTTGCTTATGGCCGTGACAAAATGAGGGAGCTGATGAGGAGGTTGAACGGTAGCGACAACCAAATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.64

Weight (kDa)

8.39

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 148, 504
AfaI GTAC 2 cut(s) 62, 433
AfiI CCNNNNNNNGG 2 cut(s) 350, 354
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 3 cut(s) 32, 251, 472
AluI AGCT 3 cut(s) 32, 251, 472
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 162
AoxI GGCC 2 cut(s) 375, 451
ApeKI GCWGC 2 cut(s) 36, 77
ApoI RAATTY 2 cut(s) 148, 504
AspA2I CCTAGG 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 375, 399
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 399
AvrII CCTAGG 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 48, 89
BccI CCATC 1 cut(s) 105
BceAI ACGGC 2 cut(s) 362, 438
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 37, 78
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 2 cut(s) 38, 79
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 375, 399
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 354
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 350, 354
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 6 cut(s) 62, 92, 113, 323, 326, 493
BseXI GCAGC 2 cut(s) 48, 89
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 377, 453
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 74, 144
BslFI GGGAC 2 cut(s) 235, 412
BslI CCNNNNNNNGG 2 cut(s) 350, 354
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 235, 412
BsnI GGCC 2 cut(s) 377, 453
Bsp1286I GDGCHC 1 cut(s) 333
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 377, 453
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 5 cut(s) 156, 184, 260, 429, 491
BstC8I GCNNGC 2 cut(s) 34, 138
BstDEI CTNAG 2 cut(s) 28, 419
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 2 cut(s) 140, 372
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 48, 89
BsuRI GGCC 2 cut(s) 377, 453
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 180, 425
Cac8I GCNNGC 2 cut(s) 34, 138
CciI TCATGA 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 375, 399
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 61, 432
CviAII CATG 3 cut(s) 137, 280, 369
CviJI RGCY 7 cut(s) 32, 251, 294, 347, 377, 453, 472
CviKI_1 RGCY 7 cut(s) 32, 251, 294, 347, 377, 453, 472
CviQI GTAC 2 cut(s) 61, 432
DdeI CTNAG 2 cut(s) 28, 419
EaeI YGGCCR 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 3 cut(s) 140, 283, 372
FaqI GGGAC 2 cut(s) 235, 412
FatI CATG 3 cut(s) 136, 279, 368
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 37, 78
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 37, 78
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 37, 78
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 2 cut(s) 377, 453
HapII CCGG 2 cut(s) 74, 144
HgaI GACGC 1 cut(s) 446
Hin1II CATG 3 cut(s) 140, 283, 372
HindIII AAGCTT 1 cut(s) 249
HpaII CCGG 2 cut(s) 74, 144
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 360, 432
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 2 cut(s) 360, 432
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 5 cut(s) 156, 184, 260, 429, 491
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 2 cut(s) 28, 419
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 3 cut(s) 140, 283, 372
LmnI GCTCC 2 cut(s) 336, 469
LpnPI CCDG 7 cut(s) 18, 87, 113, 140, 157, 311, 357
Lsp1109I GCAGC 2 cut(s) 48, 89
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 166, 455
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 148, 393, 504
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 1 cut(s) 511
MslI CAYNNNNRTG 2 cut(s) 85, 185
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 74, 144
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 328
NlaIII CATG 3 cut(s) 140, 283, 372
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 166, 455
NspI RCATGY 2 cut(s) 140, 372
OliI CACNNNNGTG 1 cut(s) 185
PaeI GCATGC 1 cut(s) 140
PagI TCATGA 1 cut(s) 279
PciI ACATGT 1 cut(s) 368
PkrI GCNGC 2 cut(s) 38, 79
PscI ACATGT 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 375, 399
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 62, 433
RsaNI GTAC 2 cut(s) 61, 432
RseI CAYNNNNRTG 2 cut(s) 85, 185
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 2 cut(s) 37, 78
Sau96I GGNCC 2 cut(s) 375, 399
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 9, 34, 132, 253, 474, 485
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 2 cut(s) 85, 185
SphI GCATGC 1 cut(s) 140
Sse9I AATT 3 cut(s) 148, 393, 504
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 5 cut(s) 156, 184, 260, 429, 491
TaiI ACGT 1 cut(s) 9
TasI AATT 3 cut(s) 148, 393, 504
TatI WGTACW 1 cut(s) 431
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TscAI CASTG 2 cut(s) 187, 432
TseFI GTSAC 2 cut(s) 166, 455
TseI GCWGC 2 cut(s) 36, 77
Tsp45I GTSAC 2 cut(s) 166, 455
TspDTI ATGAA 3 cut(s) 17, 288, 296
TspRI CASTG 2 cut(s) 187, 432
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 2 cut(s) 148, 504
XceI RCATGY 2 cut(s) 140, 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.