RLG00000021648

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
76983506 .. 76984093
588 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021648

Sequence Viewer

Length: 588 bp
ATGGAGGAGTGTGCACCTCGGGCCAAATCTATGGTGGCATTGAACAAATGCATTGTTTCTCTCATCGCCATCTTAGGCTTTTGCCTCCAACTGGAGTTTGCAAATTCGGGTCCAGACTACAGCAGTACACTATTGATGAGGCTGTTTGTTATCTACGTATCGGCTTACTTCGGGTCAATAGGTGTCATGGTACTCCGAACTGATCACAGTACGACAGACTTTCGTAATTTAATGAATAGGATCATCATCTTGGTGGGAACTTTTGCTTGCATTTTAGAACCGCTCATCCTCGTTCCACCTTTTGGATGGCTCGTTCTCTTCTTCTGGAGTATCTGTTTTGTTAGCGTTGCGAGTAAGTCATACCAATACTTGAAAACACAATGTGAAAGTGCGGTTTTAGCTCTTGTTCTAGCCTCTGGCGAATTGAAAGAGAAGCTGATAGCGATGAATGGCCGTTTGATGGAGAATTTCGCAGTTTCAGGGATTTTTCGTGCCTGTAAAAAACTGAAAAATCTTATCAGAATTTTCCGCTGCACTGGGCATGAAGCCCAGAACCAGAACCAGATCATCAATGGGTTACCTGTTTAA

Protein Analysis

196

Amino Acids

21.76

Weight (kDa)

8.96

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 283
AciI CCGC 3 cut(s) 281, 392, 529
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 3 cut(s) 103, 466, 522
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 3 cut(s) 127, 192, 211
AfiI CCNNNNNNNGG 3 cut(s) 91, 302, 460
AgsI TTSAA 3 cut(s) 43, 373, 427
AloI GAACNNNNNNTCC 4 cut(s) 270, 297, 302, 329
AluBI AGCT 2 cut(s) 401, 436
AluI AGCT 2 cut(s) 401, 436
Alw21I GWGCWC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 2 cut(s) 21, 451
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 3 cut(s) 103, 466, 522
AspS9I GGNCC 2 cut(s) 21, 110
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 518
BccI CCATC 3 cut(s) 77, 300, 454
BceAI ACGGC 1 cut(s) 438
BclI TGATCA 1 cut(s) 202
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 118
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 21, 110
BmiI GGNNCC 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 546
BpmI CTGGAG 2 cut(s) 113, 346
BsaAI YACGTR 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 302, 460
Bse1I ACTGG 2 cut(s) 96, 541
Bse8I GATNNNNATC 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 285, 311
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 91, 302, 460
BseNI ACTGG 2 cut(s) 96, 541
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 517
BshFI GGCC 2 cut(s) 23, 453
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 91, 302, 460
BsnI GGCC 2 cut(s) 23, 453
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 202, 240, 564
BspACI CCGC 3 cut(s) 281, 392, 529
BspANI GGCC 2 cut(s) 23, 453
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 2 cut(s) 96, 541
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 202, 240, 564
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 576
BstF5I GGATG 2 cut(s) 285, 311
BstKTI GATC 3 cut(s) 205, 243, 567
BstMBI GATC 3 cut(s) 202, 240, 564
BstMWI GCNNNNNNNGC 2 cut(s) 20, 398
BstPI GGTNACC 1 cut(s) 576
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 16
BstSNI TACGTA 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 518
BstXI CCANNNNNNTGG 1 cut(s) 31
BsuRI GGCC 2 cut(s) 23, 453
BtgZI GCGATG 2 cut(s) 49, 458
BtsCI GGATG 2 cut(s) 285, 311
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 21, 110
Csp6I GTAC 3 cut(s) 126, 191, 210
CviAII CATG 2 cut(s) 187, 542
CviQI GTAC 3 cut(s) 126, 191, 210
DdeI CTNAG 1 cut(s) 73
DpnI GATC 3 cut(s) 204, 242, 566
DpnII GATC 3 cut(s) 202, 240, 564
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco105I TACGTA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 576
EcoO65I GGTNACC 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 53
FaeI CATG 2 cut(s) 190, 545
FaiI YATR 4 cut(s) 32, 188, 361, 543
FatI CATG 2 cut(s) 186, 541
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 2 cut(s) 272, 318
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 1 cut(s) 410
GluI GCNGC 1 cut(s) 532
GsuI CTGGAG 2 cut(s) 113, 346
HaeIII GGCC 2 cut(s) 23, 453
Hin1II CATG 2 cut(s) 190, 545
Hpy166II GTNNAC 2 cut(s) 14, 128
Hpy188I TCNGA 2 cut(s) 197, 521
Hpy188III TCNNGA 2 cut(s) 113, 325
Hpy8I GTNNAC 2 cut(s) 14, 128
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 5 cut(s) 14, 51, 101, 270, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 398
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 190, 545
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 202, 240, 564
Lsp1109I GCAGC 1 cut(s) 518
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 576
MalI GATC 3 cut(s) 204, 242, 566
MbiI CCGCTC 1 cut(s) 283
MboI GATC 3 cut(s) 202, 240, 564
MboII GAAGA 2 cut(s) 310, 313
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 103, 226, 422, 466, 522
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 27, 95, 132, 299, 424
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 2 cut(s) 230, 586
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 20, 398
NdeII GATC 3 cut(s) 202, 240, 564
NlaIII CATG 2 cut(s) 190, 545
NlaIV GGNNCC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 2 cut(s) 21, 110
RsaI GTAC 3 cut(s) 127, 192, 211
RsaNI GTAC 3 cut(s) 126, 191, 210
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 2 cut(s) 230, 586
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 3 cut(s) 202, 240, 564
Sau96I GGNCC 2 cut(s) 21, 110
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 19, 159, 184, 301, 403, 438, 583
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 5 cut(s) 103, 226, 422, 466, 522
SsiI CCGC 3 cut(s) 281, 392, 529
SspMI CTAG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 159
TasI AATT 5 cut(s) 103, 226, 422, 466, 522
TatI WGTACW 1 cut(s) 125
Tru1I TTAA 2 cut(s) 230, 586
Tru9I TTAA 2 cut(s) 230, 586
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 531
TspDTI ATGAA 3 cut(s) 248, 461, 558
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 3 cut(s) 103, 466, 522
XcmI CCANNNNNNNNNTGG 3 cut(s) 31, 303, 569
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.