Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

56994748 .. 57005262

Gene Structure 10515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG375200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCGGACATCACTTCTATCACCTCCCAGCCTCTGCACAGCACAACGGGGGACAGTGCTCGTAAGGGATATTCGATGGTGACATTGCATACATGCATAGTTGCTTTCATCGGCGTCTTAGGAGTCTGCATCCAACTCAAGTTTCCAAATGTGTCTCCATATGCGACCTCCTACGGCGCTGTGATGATGGACCTCTTCATTATTGAAACATGCTTTTACTTCATCTCTCTAGTTGTGATGGGAATCCAAGCTGCTGGTAATAATACAGCTTTGGAAGATCTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTCTCCCTGATTTTAGAGTTGCTAGTTCTTATTTCACCTTTTGGATGGATCGTACTCTTGTTCTGGGGCATCTGCCTTGTATGCTTCGTGCGTAAGTATTACCAGTCTCTGGAAACACACTACCAAAATGCAGCTGCACATGTTGTTACACACTTTGGAGAATTGAAACAGAAGCTGGTTAATTTGAAATGCCGCTTGATGGACATCATCATAAGGAATGACGGGCGCATGACTGAGCATGAATCCCACAACCAGAACCGCACCAATGAGGCACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

197

Amino Acids

22.0

Weight (kDa)

6.64

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	2 cut(s)	505, 571
AclWI	GGATC	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	421, 511
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	206, 478, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	251, 269, 446, 487
AluI	AGCT	4 cut(s)	251, 269, 446, 487
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	3 cut(s)	159, 317, 423
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	3 cut(s)	34, 421, 487
ApeKI	GCWGC	3 cut(s)	251, 443, 446
AspLEI	GCGC	2 cut(s)	179, 540
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	13, 91, 339
AvaII	GGWCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	238, 433, 455
BccI	CCATC	5 cut(s)	70, 181, 232, 351, 505
BceAI	ACGGC	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	159, 317, 423
BfaI	CTAG	2 cut(s)	230, 335
BfoI	RGCGCY	1 cut(s)	180
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	4 cut(s)	252, 444, 447, 505
BlsI	GCNGC	4 cut(s)	253, 445, 448, 506
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	585
BmsI	GCATC	2 cut(s)	138, 390
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	2 cut(s)	242, 515
BsaHI	GRCGYC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 511
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	83
Bse8I	GATNNNNATC	2 cut(s)	242, 515
BseGI	GGATG	2 cut(s)	129, 362
BseJI	GATNNNNATC	2 cut(s)	242, 515
BseLI	CCNNNNNNNGG	2 cut(s)	421, 511
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	3 cut(s)	238, 433, 455
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	2 cut(s)	20, 432
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	421, 511
BsmAI	GTCTC	3 cut(s)	159, 317, 423
BsmFI	GGGAC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	277, 360
BspACI	CCGC	2 cut(s)	505, 571
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	585
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	277, 360
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	118, 546
BstF5I	GGATG	2 cut(s)	129, 362
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	179, 540
BstKTI	GATC	2 cut(s)	280, 363
BstMAI	GTCTC	3 cut(s)	159, 317, 423
BstMBI	GATC	2 cut(s)	277, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNSI	RCATGY	3 cut(s)	96, 213, 455
BstV1I	GCAGC	3 cut(s)	238, 433, 455
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	129, 362
BtsIMutI	CAGTG	1 cut(s)	61
CaiI	CAGNNNCTG	3 cut(s)	34, 421, 487
CfoI	GCGC	2 cut(s)	179, 540
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	5 cut(s)	93, 210, 452, 541, 551
CviJI	RGCY	6 cut(s)	31, 251, 269, 297, 446, 487
CviKI_1	RGCY	6 cut(s)	31, 251, 269, 297, 446, 487
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	118, 546
DpnI	GATC	2 cut(s)	279, 362
DpnII	GATC	2 cut(s)	277, 360
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	98
FaeI	CATG	5 cut(s)	96, 213, 455, 544, 554
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	5 cut(s)	92, 209, 451, 540, 550
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	4 cut(s)	252, 444, 447, 505
FokI	GGATG	2 cut(s)	116, 369
Fsp4HI	GCNGC	4 cut(s)	252, 444, 447, 505
FspBI	CTAG	2 cut(s)	230, 335
GlaI	GCGC	2 cut(s)	178, 539
GluI	GCNGC	4 cut(s)	252, 444, 447, 505
GsaI	CCCAGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	180
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	179, 540
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	96, 213, 455, 544, 554
Hin6I	GCGC	2 cut(s)	177, 538
HinP1I	GCGC	2 cut(s)	177, 538
HinfI	GANTC	3 cut(s)	123, 243, 554
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	13, 91, 339
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	37, 88, 96, 129, 443, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	2 cut(s)	118, 546
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	96, 213, 455, 544, 554
HspAI	GCGC	2 cut(s)	177, 538
Kzo9I	GATC	2 cut(s)	277, 360
LpnPI	CCDG	9 cut(s)	18, 41, 240, 332, 361, 407, 428, 473, 578
Lsp1109I	GCAGC	3 cut(s)	238, 433, 455
LweI	GCATC	2 cut(s)	138, 390
MaeI	CTAG	2 cut(s)	230, 335
MaeIII	GTNAC	2 cut(s)	79, 457
MalI	GATC	2 cut(s)	279, 362
MboI	GATC	2 cut(s)	277, 360
MboII	GAAGA	2 cut(s)	187, 287
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	291, 473, 493
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	34, 42, 178, 203, 308, 574
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	492, 592
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	277, 360
NlaIII	CATG	5 cut(s)	96, 213, 455, 544, 554
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	98
NspI	RCATGY	3 cut(s)	96, 213, 455
PciI	ACATGT	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	243, 554
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	253, 445, 448, 506
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PscI	ACATGT	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	3 cut(s)	34, 421, 487
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	492, 592
SatI	GCNGC	4 cut(s)	252, 444, 447, 505
Sau3AI	GATC	2 cut(s)	277, 360
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	9 cut(s)	26, 170, 195, 253, 271, 352, 448, 489, 589
SfaNI	GCATC	2 cut(s)	138, 390
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	291, 473, 493
SsiI	CCGC	2 cut(s)	505, 571
SspMI	CTAG	2 cut(s)	230, 335
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	291, 473, 493
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	2 cut(s)	243, 554
Tru1I	TTAA	2 cut(s)	492, 592
Tru9I	TTAA	2 cut(s)	492, 592
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	251, 443, 446
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	97, 187, 211, 299, 567
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	3 cut(s)	96, 213, 455
XspI	CTAG	2 cut(s)	230, 335
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.