Prupe.3G260600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000247
Physical Location & Seq
Reverse (-)
24660038 .. 24661220
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G260600.1

Sequence Viewer

Length: 657 bp
ATGGTTAAGAAGGTTGACTGGGATGGGGATGGTATTCTTGATTTTGATGAGTTCAAGAGGATGATGAAAGGTGTAACCCAAAAAAACTTGGGCTTAGGAGCCTTAGCTGTCAGCGTATATCTAGTTAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTCAGAATTCTCACGGGGCACTGCACAAATATAATTTCTTTCTGCTGGCCATGCTGGGCGCTCTCCTCCAACTGAAGCACGCAGCCGCAAACATTGCCTCTCCATTTGTCACAAACTACGTTACTCTACTCATTTTTATTGTTGACTTATTTGTTTACGTGGCCTCATTGGTGACTGTCGAGATGTTGGAAAACAATCCAGATTTGGCTGAATTCATGAACAACGTTAGCCTCCTGTCAGGAGTTCTTGCCTCCGCCTTACTATTGCTGATCCTCATCCCGGCTCTCGGGTGGCTCACCCTCCTCTTGTGGATCACTTATTTTGTGAAGGACGTTGTAACTGTGAGATCGTATACCAGTGTCGCTCTTCATGTCTTTGACAGAGTGGAAGAGCTTATGAATATTCAGGAGCAGAATAATGGTGATCAACAAGAAATTAGAATGGAGGAGGGGCAGAATGGGCCACCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.68

Weight (kDa)

4.3

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 536
AciI CCGC 2 cut(s) 270, 438
AclI AACGTT 1 cut(s) 408
AclWI GGATC 2 cut(s) 448, 503
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 190, 395
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 463, 470
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 2 cut(s) 107, 577
AluI AGCT 2 cut(s) 107, 577
AlwI GGATC 2 cut(s) 448, 503
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 3 cut(s) 231, 345, 644
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 2 cut(s) 190, 395
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 367, 472, 617
AvaI CYCGRG 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 17, 23
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 2 cut(s) 267, 270
BlsI GCNGC 2 cut(s) 268, 271
Bme1390I CCNGG 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
Bpu10I CCTNAGC 2 cut(s) 94, 103
BpuMI CCSGG 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 470
Bse1I ACTGG 2 cut(s) 23, 540
Bse3DI GCAATG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 458
BseGI GGATG 4 cut(s) 28, 34, 66, 459
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 2 cut(s) 463, 470
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 23, 540
BseRI GAGGAG 3 cut(s) 239, 476, 644
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 3 cut(s) 233, 347, 646
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 464
BslI CCNNNNNNNGG 2 cut(s) 463, 470
BsnI GGCC 3 cut(s) 233, 347, 646
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 4 cut(s) 453, 495, 530, 607
BspACI CCGC 2 cut(s) 270, 438
BspANI GGCC 3 cut(s) 233, 347, 646
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 2 cut(s) 448, 503
BspQI GCTCTTC 2 cut(s) 555, 567
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 2 cut(s) 23, 540
BssMI GATC 4 cut(s) 453, 495, 530, 607
BssNAI GTATAC 1 cut(s) 537
Bst1107I GTATAC 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 361, 526
Bst6I CTCTTC 3 cut(s) 174, 555, 567
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 231, 264
BstDEI CTNAG 2 cut(s) 94, 103
BstF5I GGATG 4 cut(s) 28, 34, 66, 459
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 456, 498, 533, 610
BstMBI GATC 4 cut(s) 453, 495, 530, 607
BstMWI GCNNNNNNNGC 3 cut(s) 235, 278, 643
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 278
BstZ17I GTATAC 1 cut(s) 537
BsuRI GGCC 3 cut(s) 233, 347, 646
BtsCI GGATG 4 cut(s) 28, 34, 66, 459
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 3 cut(s) 203, 547, 652
Cac8I GCNNGC 2 cut(s) 231, 264
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 644
CviAII CATG 3 cut(s) 235, 400, 554
DdeI CTNAG 2 cut(s) 94, 103
DpnI GATC 4 cut(s) 455, 497, 532, 609
DpnII GATC 4 cut(s) 453, 495, 530, 607
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 3 cut(s) 174, 555, 567
EarI CTCTTC 3 cut(s) 174, 555, 567
EciI GGCGGA 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 470
EcoRI GAATTC 2 cut(s) 190, 395
FaeI CATG 3 cut(s) 238, 403, 557
FaiI YATR 7 cut(s) 118, 216, 236, 401, 537, 555, 581
FatI CATG 3 cut(s) 234, 399, 553
FbaI TGATCA 1 cut(s) 607
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 2 cut(s) 267, 270
FokI GGATG 4 cut(s) 35, 41, 73, 446
Fsp4HI GCNGC 2 cut(s) 267, 270
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 267, 270
GsaI CCCAGC 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 233, 347, 646
HapII CCGG 1 cut(s) 464
HhaI GCGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 238, 403, 557
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 2 cut(s) 16, 328
HindII GTYRAC 2 cut(s) 16, 328
HpaII CCGG 1 cut(s) 464
HphI GGTGA 3 cut(s) 367, 472, 617
Hpy166II GTNNAC 4 cut(s) 16, 328, 340, 537
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 7 cut(s) 38, 55, 364, 383, 400, 423, 590
Hpy8I GTNNAC 4 cut(s) 16, 328, 340, 537
HpyAV CCTTC 2 cut(s) 4, 505
HpyCH4III ACNGT 2 cut(s) 361, 526
HpyCH4IV ACGT 4 cut(s) 303, 342, 408, 516
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 278, 643
HpyF3I CTNAG 2 cut(s) 94, 103
HpySE526I ACGT 4 cut(s) 303, 342, 408, 516
Hsp92II CATG 3 cut(s) 238, 403, 557
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 4 cut(s) 453, 495, 530, 607
LguI GCTCTTC 2 cut(s) 555, 567
LmnI GCTCC 2 cut(s) 98, 592
LpnPI CCDG 9 cut(s) 4, 215, 224, 396, 408, 431, 477, 553, 575
Lsp1109I GCAGC 1 cut(s) 278
MaeI CTAG 1 cut(s) 122
MaeII ACGT 4 cut(s) 303, 342, 408, 516
MaeIII GTNAC 5 cut(s) 73, 292, 304, 355, 520
MalI GATC 4 cut(s) 455, 497, 532, 609
MboI GATC 4 cut(s) 453, 495, 530, 607
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 4 cut(s) 190, 217, 395, 618
MluNI TGGCCA 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 277, 351
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 233
MseI TTAA 2 cut(s) 6, 126
Msp20I TGGCCA 1 cut(s) 233
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 464
MwoI GCNNNNNNNGC 3 cut(s) 235, 278, 643
NciI CCSGG 1 cut(s) 464
NdeII GATC 4 cut(s) 453, 495, 530, 607
NlaIII CATG 3 cut(s) 238, 403, 557
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 292, 355
PagI TCATGA 1 cut(s) 399
PciSI GCTCTTC 2 cut(s) 555, 567
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 268, 271
Ppu21I YACGTR 1 cut(s) 343
Psp1406I AACGTT 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 644
SapI GCTCTTC 2 cut(s) 555, 567
SaqAI TTAA 2 cut(s) 6, 126
SatI GCNGC 2 cut(s) 267, 270
Sau3AI GATC 4 cut(s) 453, 495, 530, 607
Sau96I GGNCC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 1 cut(s) 205
Sse9I AATT 4 cut(s) 190, 217, 395, 618
SsiI CCGC 2 cut(s) 270, 438
SspI AATATT 1 cut(s) 586
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 361, 526
TaiI ACGT 4 cut(s) 306, 345, 411, 519
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 190, 217, 395, 618
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 6, 126
Tru9I TTAA 2 cut(s) 6, 126
TscAI CASTG 2 cut(s) 210, 547
TseFI GTSAC 2 cut(s) 292, 355
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 2 cut(s) 292, 355
TspDTI ATGAA 5 cut(s) 80, 388, 416, 542, 596
TspRI CASTG 2 cut(s) 210, 547
XapI RAATTY 2 cut(s) 190, 395
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.