Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

82312129 .. 82313592

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG592300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTAATATTCCTTATAACTTCATTTCTTCCATATATCATTTCTTTGTTGGTCCGGACTCCGAAGCTGGTAGGAAGCGAGAGGAAGGTTTGAGCTCCACACAGATCGAGAAGCTGCGGAATGGAGAACAGCAATTGGAGGAGTGTGCACCTCGGGCCAAATCTATGGTGGGATTGAACAAATGCATTGTTTCTCTCATCGCCATCTTAGGCTTTTGCCTCCAACTGGAGTTTGCAAATTCGTCTCTGGACTACAGCAGTGCACTATTGATGAGGCTGTTTGTTATCGACGTGTCGGCTTACTTCGGGTCAATAGGTGTCATGATACTCCAAACTGATCACAGTACGACAGGCTTTCGTAATTTAATGAATAGGATCATCATCTTGGTGGGAACTTTTGCTTGCATTTTAGAACTGCTCATCCTCGTTCCACCTTTTGGATGGCTCGTTCTCTTCTTCTGGAGTATCTGTTTTGTTAGCGTTGCGAGTAAGTCATACCAATACTTGAAAACACTATGTGAAAGTGCGGTTTCAGCTCTTGTTCTAGCCTCTGGCGAATTGAAAGAGAAGCTGATAGCGATGAATGGCCGTTTGATGGAGAATTTCGCAGTTTCAGGGATTTTTCGTGCCTGTAAAAAACTGAAAAAGCTTATCAGAATTTTCTGCTGCACTGAGCATGAAGCCCAGAACCGGAAACAGATCATCAATGGGTTACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

240

Amino Acids

26.81

Weight (kDa)

8.72

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	2 cut(s)	118, 527
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	3 cut(s)	238, 601, 657
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	4 cut(s)	226, 437, 595, 690
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	178, 508, 562
AjiI	CACGTC	1 cut(s)	292
AloI	GAACNNNNNNTCC	4 cut(s)	405, 432, 437, 464
AluBI	AGCT	6 cut(s)	68, 96, 115, 536, 571, 649
AluI	AGCT	6 cut(s)	68, 96, 115, 536, 571, 649
Alw21I	GWGCWC	3 cut(s)	98, 151, 265
Alw26I	GTCTC	1 cut(s)	249
Alw44I	GTGCAC	2 cut(s)	147, 261
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	153
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	156, 586
ApaLI	GTGCAC	2 cut(s)	147, 261
ApeKI	GCWGC	2 cut(s)	115, 666
ApoI	RAATTY	3 cut(s)	238, 601, 657
AspS9I	GGNCC	2 cut(s)	53, 156
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	2 cut(s)	151, 265
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	3 cut(s)	98, 151, 265
BbvI	GCAGC	2 cut(s)	102, 653
BccI	CCATC	3 cut(s)	212, 435, 589
BceAI	ACGGC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	2 cut(s)	116, 667
BlsI	GCNGC	2 cut(s)	117, 668
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	53, 156
BpmI	CTGGAG	2 cut(s)	248, 481
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	2 cut(s)	55, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 437, 595, 690
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	420, 446
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	226, 437, 595, 690
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	2 cut(s)	151, 265
BseXI	GCAGC	2 cut(s)	102, 653
BsgI	GTGCAG	1 cut(s)	652
BshFI	GGCC	2 cut(s)	158, 588
BsiHKAI	GWGCWC	3 cut(s)	98, 151, 265
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	56, 691
BslI	CCNNNNNNNGG	4 cut(s)	226, 437, 595, 690
BsmAI	GTCTC	1 cut(s)	249
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	158, 588
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	3 cut(s)	98, 151, 265
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	105, 337, 375, 699
BspACI	CCGC	2 cut(s)	118, 527
BspANI	GGCC	2 cut(s)	158, 588
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	321
BspPI	GGATC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	4 cut(s)	105, 337, 375, 699
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	208, 672
BstEII	GGTNACC	1 cut(s)	711
BstF5I	GGATG	2 cut(s)	420, 446
BstKTI	GATC	4 cut(s)	108, 340, 378, 702
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	105, 337, 375, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 533
BstPI	GGTNACC	1 cut(s)	711
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	2 cut(s)	151, 265
BstV1I	GCAGC	2 cut(s)	102, 653
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	158, 588
BtgZI	GCGATG	2 cut(s)	184, 593
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	420, 446
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	265, 669
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	53, 156
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	2 cut(s)	322, 677
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	208, 672
DpnI	GATC	4 cut(s)	107, 339, 377, 701
DpnII	GATC	4 cut(s)	105, 337, 375, 699
DraIII	CACNNNGTG	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	586
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	96
EcoO65I	GGTNACC	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	2 cut(s)	325, 680
FaiI	YATR	8 cut(s)	18, 35, 37, 167, 323, 496, 517, 678
FatI	CATG	2 cut(s)	321, 676
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	116, 667
FokI	GGATG	2 cut(s)	407, 453
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	116, 667
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	2 cut(s)	116, 667
GsuI	CTGGAG	2 cut(s)	248, 481
HaeIII	GGCC	2 cut(s)	158, 588
HapII	CCGG	2 cut(s)	56, 691
Hin1II	CATG	2 cut(s)	325, 680
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	2 cut(s)	56, 691
Hpy166II	GTNNAC	2 cut(s)	149, 263
Hpy188I	TCNGA	2 cut(s)	64, 656
Hpy188III	TCNNGA	5 cut(s)	56, 109, 248, 322, 460
Hpy8I	GTNNAC	2 cut(s)	149, 263
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	6 cut(s)	149, 186, 236, 263, 405, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 533
HpyF3I	CTNAG	2 cut(s)	208, 672
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	325, 680
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	105, 337, 375, 699
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	102, 653
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	711
MalI	GATC	4 cut(s)	107, 339, 377, 701
MboI	GATC	4 cut(s)	105, 337, 375, 699
MboII	GAAGA	3 cut(s)	21, 445, 448
MfeI	CAATTG	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	98, 151, 265
MluCI	AATT	6 cut(s)	134, 238, 361, 557, 601, 657
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	76, 133, 162, 230, 267, 434, 559
Mph1103I	ATGCAT	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	365, 721
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	2 cut(s)	56, 691
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	155, 533
NdeII	GATC	4 cut(s)	105, 337, 375, 699
NlaIII	CATG	2 cut(s)	325, 680
NsiI	ATGCAT	1 cut(s)	188
PagI	TCATGA	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	117, 668
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	98
PspEI	GGTNACC	1 cut(s)	711
PspPI	GGNCC	2 cut(s)	53, 156
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	365, 721
SatI	GCNGC	2 cut(s)	116, 667
Sau3AI	GATC	4 cut(s)	105, 337, 375, 699
Sau96I	GGNCC	2 cut(s)	53, 156
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	3 cut(s)	98, 151, 265
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	6 cut(s)	134, 238, 361, 557, 601, 657
SsiI	CCGC	2 cut(s)	118, 527
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	108, 288
TasI	AATT	6 cut(s)	134, 238, 361, 557, 601, 657
Tru1I	TTAA	2 cut(s)	365, 721
Tru9I	TTAA	2 cut(s)	365, 721
TscAI	CASTG	2 cut(s)	265, 676
TseI	GCWGC	2 cut(s)	115, 666
TspDTI	ATGAA	4 cut(s)	13, 383, 596, 693
TspRI	CASTG	2 cut(s)	265, 676
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	2 cut(s)	147, 261
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	3 cut(s)	238, 601, 657
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 438
XspI	CTAG	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.