Prupe.3G260900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000247
Physical Location & Seq
Reverse (-)
24715341 .. 24717648
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G260900.1

Sequence Viewer

Length: 474 bp
GACAGTGTGTTAATAGTAAACAACACAGAACTTTCTACAAGGAGATTCCATCAATATATATGTTTTGTCATCACCATACTAGGCGTGTTCTTCCAATTGAAACAGGGATCTGGAAAGATATCTCTATTTGACGCAAACTACCTGTCTTTTGTGATACTTATTGTTGCTATAATCGTTTACGGAGGGTCATTAATTGGCGCCACATATATACGCCAAGCTCACCCTAATTCAGATTTGGCAAAATTTATGGACAATATTAGCCTTCTTTGTGGAGCTCTTGTCTTTGTTTTGGAATTGGTGATTCTTGTTCCGGCTTTAGGGTTATCTGCCCTCCTCTTCTGGATCGGTTGTTTTGTGAGTTTTATAGCTGTTTACTTGTACCCATACCTCAAAACATTGTTTACAAGGACAGTTGGAGGAGTTGTTCACGCCTTTAAAAAATTGAAAGAGTATCTACCCACTGCTTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

9.03

Isoelectric Point (pI)

23.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AclWI GGATC 2 cut(s) 115, 350
AcsI RAATTY 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 100, 445
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 3 cut(s) 218, 275, 368
AluI AGCT 3 cut(s) 218, 275, 368
Alw21I GWGCWC 1 cut(s) 277
AlwI GGATC 2 cut(s) 115, 350
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AseI ATTAAT 1 cut(s) 191
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 64, 212, 310
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 277
BccI CCATC 1 cut(s) 57
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 323, 432
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 107, 342
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 115, 350
BspT107I GGYRCC 1 cut(s) 197
BssMI GATC 2 cut(s) 107, 342
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 5, 412
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 110, 345
BstMBI GATC 2 cut(s) 107, 342
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 10, 459
CfoI GCGC 1 cut(s) 200
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 379
CviJI RGCY 5 cut(s) 218, 261, 275, 314, 368
CviKI_1 RGCY 5 cut(s) 218, 261, 275, 314, 368
CviQI GTAC 1 cut(s) 379
DinI GGCGCC 1 cut(s) 199
DpnI GATC 2 cut(s) 109, 344
DpnII GATC 2 cut(s) 107, 342
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco32I GATATC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 275
EcoICRI GAGCTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 277
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 277
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 2 cut(s) 45, 301
HpaII CCGG 1 cut(s) 311
HphI GGTGA 3 cut(s) 64, 212, 310
Hpy166II GTNNAC 5 cut(s) 19, 178, 373, 402, 427
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 111, 340
Hpy8I GTNNAC 5 cut(s) 19, 178, 373, 402, 427
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 5, 412
HpyCH4V TGCA 1 cut(s) 469
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 1 cut(s) 198
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 107, 342
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 5 cut(s) 89, 96, 155, 324, 325
MaeI CTAG 1 cut(s) 80
MalI GATC 2 cut(s) 109, 344
MboI GATC 2 cut(s) 107, 342
MboII GAAGA 2 cut(s) 82, 328
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 6 cut(s) 95, 192, 226, 242, 293, 440
Mly113I GGCGCC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 5 cut(s) 176, 341, 344, 398, 410
MseI TTAA 3 cut(s) 11, 191, 435
MspI CCGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 95
NarI GGCGCC 1 cut(s) 198
NdeII GATC 2 cut(s) 107, 342
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 45, 301
PluTI GGCGCC 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 3 cut(s) 11, 191, 435
Sau3AI GATC 2 cut(s) 107, 342
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 144, 220, 277, 370, 390
SfoI GGCGCC 1 cut(s) 199
Sse9I AATT 6 cut(s) 95, 192, 226, 242, 293, 440
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 1 cut(s) 277
TaaI ACNGT 2 cut(s) 5, 412
TasI AATT 6 cut(s) 95, 192, 226, 242, 293, 440
TfiI GAWTC 2 cut(s) 45, 301
Tru1I TTAA 3 cut(s) 11, 191, 435
Tru9I TTAA 3 cut(s) 11, 191, 435
TscAI CASTG 1 cut(s) 466
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 466
VspI ATTAAT 1 cut(s) 191
XapI RAATTY 1 cut(s) 242
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.