Rmu_sc0006838.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006838.1
OG0000247
Physical Location & Seq
Reverse (-)
46192 .. 46644
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006838.1_g000019.1.cds

Sequence Viewer

Length: 453 bp
atggccatattaggctggctagtccaactgaagtacacatctgcgactgcatctccattcatcaccgactatgttaccattcggatgtttatagtcgctttcttggtttactttgggttcttgactgtggagatattattagcccatgctcctaattcagatatgggggagttcatcaacaacattaccgtcttgttcggaactctggcctcgatcttgctactgcttatcctcgttcaagcttttgggttgtttgccctcctcttgtggatgatttatcttgtgagggatgttgtaactaagaagtcctacaggaatgcaatttgtgatgtcttcaacaaagtaagagagatgattaatgctcacttggtggagattaatgctggacaacccgaacccccgccacagaccgttgtacaaatcgaagatgaaggagaaccgaatgttccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

4.83

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 35, 417
AgsI TTSAA 2 cut(s) 239, 337
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AoxI GGCC 2 cut(s) 3, 207
AseI ATTAAT 2 cut(s) 357, 378
AsuHPI GGTGA 1 cut(s) 55
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 325
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 310
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
BseGI GGATG 3 cut(s) 90, 276, 295
BseRI GAGGAG 1 cut(s) 251
BshFI GGCC 2 cut(s) 5, 209
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 2 cut(s) 5, 209
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 1 cut(s) 401
BspANI GGCC 2 cut(s) 5, 209
BsrGI TGTACA 1 cut(s) 415
BssMI GATC 1 cut(s) 213
Bst4CI ACNGT 3 cut(s) 127, 190, 412
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 90, 276, 295
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 5, 209
BtsCI GGATG 3 cut(s) 90, 276, 295
Cac8I GCNNGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 34, 416
CviAII CATG 1 cut(s) 146
CviJI RGCY 6 cut(s) 5, 15, 19, 143, 209, 242
CviKI_1 RGCY 6 cut(s) 5, 15, 19, 143, 209, 242
CviQI GTAC 2 cut(s) 34, 416
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 1 cut(s) 149
FaiI YATR 5 cut(s) 8, 72, 92, 147, 164
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 408
FokI GGATG 3 cut(s) 97, 283, 302
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 2 cut(s) 5, 209
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 240
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 36, 109
Hpy188I TCNGA 3 cut(s) 84, 160, 200
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 36, 109
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 3 cut(s) 127, 190, 412
HpyCH4V TGCA 2 cut(s) 50, 320
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 191, 298, 369
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 73, 295
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 325, 437
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 154, 321
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 220, 242, 269, 272, 279
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 357, 378
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 322
NdeII GATC 1 cut(s) 213
NlaIII CATG 1 cut(s) 149
PctI GAATGC 1 cut(s) 322
PshBI ATTAAT 2 cut(s) 357, 378
RsaI GTAC 2 cut(s) 35, 417
RsaNI GTAC 2 cut(s) 34, 416
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 357, 378
Sau3AI GATC 1 cut(s) 213
SetI ASST 1 cut(s) 244
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 2 cut(s) 154, 321
SsiI CCGC 1 cut(s) 401
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 3 cut(s) 127, 190, 412
TaqI TCGA 2 cut(s) 212, 423
TasI AATT 2 cut(s) 154, 321
TatI WGTACW 2 cut(s) 33, 415
Tru1I TTAA 2 cut(s) 357, 378
Tru9I TTAA 2 cut(s) 357, 378
TspDTI ATGAA 3 cut(s) 49, 163, 444
VspI ATTAAT 2 cut(s) 357, 378
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.