RLG00000021661

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
77067958 .. 77069007
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021661

Sequence Viewer

Length: 633 bp
ATGATATTGCTGGCATTGCATGCATTCATGTTTTCTCTCATCGAAGTCTTAGGCGTCTACCTCCAACTCAAGTCTCCAGATGTGTCTACATATGCGACCGCCTCCAGCACTGTGAAGATGGACCTCTTCATTATTGATACATGCTTTTACATCGTCTCTTTATTTGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTTCGAAGGTGTGAATCTGATGAACAAAATTAGCCTCTTACTTGGAAGTCTGTCCCTGATTATAGAGTTGCTCGTCCTTATTTCACCTTTCGGATGGATCGCACTCTTCGTATGGAGCATCTGCCTTTTATGCTTCCTGAGCAAGTCTTGCCGGTCTCTGAACACACTCTATCAAAGTGCAGTTGCAGATCTTGTTCAAGACTTTGAAGAATTGAAACAGAAGCTGGTTGATTTGAACCACCGCTTGATGGACAGTAATGCAATTGCAGCACTTGATGATGCCTATCAGACATTAAAGGACCTCATCACCAGGAATGACGGGCGCATGACAGAGCATGAACCCCAGAACCATACCACTGAGTACTTTGAGGAGAAGCTGATCATCATCAATGGCCGCTTGAAGGAAATGAGTGCAGTTTGCAGCACTTCGTGA

Protein Analysis

211

Amino Acids

23.63

Weight (kDa)

4.91

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 86
AciI CCGC 3 cut(s) 99, 442, 595
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 448, 601
AgsI TTSAA 5 cut(s) 398, 407, 415, 436, 601
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 3 cut(s) 182, 424, 577
AluI AGCT 3 cut(s) 182, 424, 577
Alw26I GTCTC 3 cut(s) 78, 160, 360
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 424
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 182, 467, 621
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 121, 499
AsuHPI GGTGA 2 cut(s) 276, 499
AsuII TTCGAA 1 cut(s) 204
AvaII GGWCC 2 cut(s) 121, 499
BbvI GCAGC 2 cut(s) 169, 479
BccI CCATC 4 cut(s) 112, 163, 288, 442
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 579
BcoDI GTCTC 3 cut(s) 78, 160, 360
BfaI CTAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 388
BisI GCNGC 4 cut(s) 183, 468, 595, 622
BlsI GCNGC 4 cut(s) 184, 469, 596, 623
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 2 cut(s) 121, 499
BmgT120I GGNCC 2 cut(s) 121, 499
BmrFI CCNGG 1 cut(s) 511
BmsI GCATC 2 cut(s) 327, 469
BpmI CTGGAG 2 cut(s) 60, 88
Bpu10I CCTNAGC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 53
BsaBI GATNNNNATC 3 cut(s) 173, 483, 584
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 601
Bse118I RCCGGY 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 14
Bse8I GATNNNNATC 3 cut(s) 173, 483, 584
BseBI CCWGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 299
BseJI GATNNNNATC 3 cut(s) 173, 483, 584
BseLI CCNNNNNNNGG 2 cut(s) 448, 601
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 329, 549
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 2 cut(s) 169, 479
BsgI GTGCAG 2 cut(s) 399, 633
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 448, 601
BsmAI GTCTC 3 cut(s) 78, 160, 360
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 1 cut(s) 360
Bsp119I TTCGAA 1 cut(s) 204
Bsp143I GATC 3 cut(s) 297, 388, 579
BspACI CCGC 3 cut(s) 99, 442, 595
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 330, 550
BspPI GGATC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssMI GATC 3 cut(s) 297, 388, 579
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 112, 455
Bst6I CTCTTC 2 cut(s) 131, 311
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 2 cut(s) 20, 348
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 12, 21, 187
BstDEI CTNAG 3 cut(s) 49, 338, 558
BstF5I GGATG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 3 cut(s) 300, 391, 582
BstMAI GTCTC 3 cut(s) 78, 160, 360
BstMBI GATC 3 cut(s) 297, 388, 579
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 6 cut(s) 16, 20, 330, 339, 348, 467
BstNI CCWGG 1 cut(s) 511
BstNSI RCATGY 2 cut(s) 23, 144
BstSCI CCNGG 1 cut(s) 509
BstV1I GCAGC 2 cut(s) 169, 479
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 594
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 2 cut(s) 108, 555
Cac8I GCNNGC 3 cut(s) 12, 21, 187
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 121, 499
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 562
CviAII CATG 5 cut(s) 20, 28, 141, 526, 536
CviJI RGCY 5 cut(s) 182, 234, 424, 577, 594
CviKI_1 RGCY 5 cut(s) 182, 234, 424, 577, 594
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 3 cut(s) 49, 338, 558
DpnI GATC 3 cut(s) 299, 390, 581
DpnII GATC 3 cut(s) 297, 388, 579
DraIII CACNNNGTG 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 131, 311
EarI CTCTTC 2 cut(s) 131, 311
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 121, 499
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 509
EcoT22I ATGCAT 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 5 cut(s) 23, 31, 144, 529, 539
FaqI GGGAC 1 cut(s) 238
FatI CATG 5 cut(s) 19, 27, 140, 525, 535
FauNDI CATATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 2 cut(s) 57, 86
Fnu4HI GCNGC 4 cut(s) 183, 468, 595, 622
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 4 cut(s) 183, 468, 595, 622
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 524
GluI GCNGC 4 cut(s) 183, 468, 595, 622
GsuI CTGGAG 2 cut(s) 60, 88
HaeIII GGCC 1 cut(s) 594
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 5 cut(s) 23, 31, 144, 529, 539
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 2 cut(s) 174, 214
HpaII CCGG 1 cut(s) 352
HphI GGTGA 2 cut(s) 276, 499
Hpy166II GTNNAC 2 cut(s) 58, 87
Hpy188I TCNGA 4 cut(s) 219, 293, 360, 489
Hpy188III TCNNGA 4 cut(s) 77, 337, 398, 630
Hpy8I GTNNAC 2 cut(s) 58, 87
HpyAV CCTTC 2 cut(s) 200, 595
HpyCH4III ACNGT 2 cut(s) 112, 455
HpyCH4V TGCA 8 cut(s) 19, 23, 380, 386, 461, 467, 614, 621
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 20, 330, 339, 348, 467
HpyF3I CTNAG 3 cut(s) 49, 338, 558
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 5 cut(s) 23, 31, 144, 529, 539
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 3 cut(s) 297, 388, 579
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 90, 118, 269, 350, 365, 410, 496, 523, 557
Lsp1109I GCAGC 2 cut(s) 169, 479
LweI GCATC 2 cut(s) 327, 469
MaeI CTAG 1 cut(s) 179
MalI GATC 3 cut(s) 299, 390, 581
MboI GATC 3 cut(s) 297, 388, 579
MboII GAAGA 4 cut(s) 118, 127, 298, 419
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 388
MluCI AATT 3 cut(s) 228, 410, 462
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 6 cut(s) 71, 112, 134, 245, 512, 562
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 1 cut(s) 494
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 6 cut(s) 16, 20, 330, 339, 348, 467
NdeI CATATG 1 cut(s) 91
NdeII GATC 3 cut(s) 297, 388, 579
NlaIII CATG 5 cut(s) 23, 31, 144, 529, 539
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 2 cut(s) 23, 144
NspV TTCGAA 1 cut(s) 204
PaeI GCATGC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 174, 214
PkrI GCNGC 4 cut(s) 184, 469, 596, 623
PpuMI RGGWCCY 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspPI GGNCC 2 cut(s) 121, 499
PspPPI RGGWCCY 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 4 cut(s) 183, 468, 595, 622
Sau3AI GATC 3 cut(s) 297, 388, 579
Sau96I GGNCC 2 cut(s) 121, 499
ScaI AGTACT 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 511
SetI ASST 8 cut(s) 63, 126, 184, 211, 289, 426, 504, 579
SfaNI GCATC 2 cut(s) 327, 469
SfuI TTCGAA 1 cut(s) 204
SinI GGWCC 2 cut(s) 121, 499
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 228, 410, 462
SsiI CCGC 3 cut(s) 99, 442, 595
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 2 cut(s) 112, 455
TaqI TCGA 2 cut(s) 42, 204
TasI AATT 3 cut(s) 228, 410, 462
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 2 cut(s) 174, 214
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 2 cut(s) 115, 562
TseI GCWGC 3 cut(s) 182, 467, 621
TspDTI ATGAA 4 cut(s) 16, 118, 236, 552
TspRI CASTG 2 cut(s) 115, 562
VpaK11BI GGWCC 2 cut(s) 121, 499
XceI RCATGY 2 cut(s) 23, 144
XmiI GTMKAC 2 cut(s) 57, 86
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.