Rh5DG476800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000247
Physical Location & Seq
Reverse (-)
75317609 .. 75318338
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG476800.1

Sequence Viewer

Length: 648 bp
ATGGCCTGGCTTTTGTTGAACAACATACCAAGCGAGGTGCGCCCTAGCATTTCTATAGGGGGAGTGCACAAAGGGATATCCCTTCTGATCACCAGTCTAGGATGCCTCCTCCCACTGACACAAGGACCCAAAGATGCGCCTCTATTGGTCACTCACTACAGTGCTATCCTCACATTTACTGTCGTTTTATTCCTTTATATCGGGTCACTGACGAGTATCTTTGTTAGGAGACTCCAAGCTCCAATCAACTTCGATCCAGCAGCTCAATTCATGAACAAGATCAGCATCTTGCTTGGAACTCTTGCTTCCCTTTTACTATTCTTCATCCTCTTTCCACTTGTTGGGCGGTTTGCCCTCTTCTTATGGACTATTTGGTTTTTAAGGGACATAACAATGTCCTACCAGTACTTAAAATCAGTCTATCAAAATGCAGCCGCAAGACTTGTTCGTACCTTTGACAGACTGAAGGAGATGATCATTGTTGTGGGTGGCCACTTGGTGGAGTATTTGAAAAGATTGTATGCTGGTGCAGTTTCAATGCTTGTTCATACCTTCAACAATTTGAAAGAGCTTATCACAATCGTGATAAATGGCCGCTTCATAGAGCAGGAAGCTGAGGACTGGAACAATGGCCTACCTGCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.18

Weight (kDa)

9.48

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 341, 499
AciI CCGC 3 cut(s) 346, 435, 595
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 2 cut(s) 490, 592
AcuI CTGAAG 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 499
AfaI GTAC 2 cut(s) 407, 451
AfiI CCNNNNNNNGG 2 cut(s) 341, 499
AgsI TTSAA 5 cut(s) 19, 511, 537, 556, 565
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 2 cut(s) 159, 581
AluBI AGCT 4 cut(s) 239, 263, 571, 614
AluI AGCT 4 cut(s) 239, 263, 571, 614
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 223
Alw44I GTGCAC 1 cut(s) 65
AlwI GGATC 1 cut(s) 248
AoxI GGCC 4 cut(s) 3, 490, 592, 631
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 260, 431
AspLEI GCGC 2 cut(s) 42, 139
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 272, 443
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 2 cut(s) 87, 474
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 45, 98
BfmI CTRYAG 3 cut(s) 54, 157, 639
BisI GCNGC 4 cut(s) 261, 432, 435, 595
BlsI GCNGC 4 cut(s) 262, 433, 436, 596
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 3 cut(s) 92, 124, 294
Bpu10I CCTNAGC 1 cut(s) 615
BsaBI GATNNNNATC 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 499
Bse1I ACTGG 3 cut(s) 93, 403, 626
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 107, 324
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 341, 499
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 3 cut(s) 93, 403, 626
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 2 cut(s) 272, 443
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 4 cut(s) 5, 492, 594, 633
BsiHKAI GWGCWC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 341, 499
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 4 cut(s) 5, 492, 594, 633
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 4 cut(s) 87, 253, 279, 474
BspACI CCGC 3 cut(s) 346, 435, 595
BspANI GGCC 4 cut(s) 5, 492, 594, 633
BspCNI CTCAG 1 cut(s) 607
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 1 cut(s) 248
BsrI ACTGG 3 cut(s) 93, 403, 626
BssMI GATC 4 cut(s) 87, 253, 279, 474
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 161, 181
Bst6I CTCTTC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 615
BstF5I GGATG 2 cut(s) 107, 324
BstHHI GCGC 2 cut(s) 42, 139
BstKTI GATC 4 cut(s) 90, 256, 282, 477
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 87, 253, 279, 474
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 3 cut(s) 54, 157, 639
BstSLI GKGCMC 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 272, 443
BsuRI GGCC 4 cut(s) 5, 492, 594, 633
BtsCI GGATG 2 cut(s) 107, 324
BtsIMutI CAGTG 3 cut(s) 113, 166, 206
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 42, 139
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 406, 450
CviAII CATG 1 cut(s) 271
CviQI GTAC 2 cut(s) 406, 450
DdeI CTNAG 1 cut(s) 615
DpnI GATC 4 cut(s) 89, 255, 281, 476
DpnII GATC 4 cut(s) 87, 253, 279, 474
DraIII CACNNNGTG 1 cut(s) 499
EaeI YGGCCR 2 cut(s) 490, 592
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 78
FaeI CATG 1 cut(s) 274
FaiI YATR 9 cut(s) 26, 56, 198, 272, 364, 389, 522, 549, 602
FaqI GGGAC 1 cut(s) 398
FatI CATG 1 cut(s) 270
FbaI TGATCA 2 cut(s) 87, 474
Fnu4HI GCNGC 4 cut(s) 261, 432, 435, 595
FokI GGATG 2 cut(s) 114, 311
Fsp4HI GCNGC 4 cut(s) 261, 432, 435, 595
FspBI CTAG 2 cut(s) 45, 98
GlaI GCGC 2 cut(s) 41, 138
GluI GCNGC 4 cut(s) 261, 432, 435, 595
HaeIII GGCC 4 cut(s) 5, 492, 594, 633
HhaI GCGC 2 cut(s) 42, 139
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 2 cut(s) 40, 137
HinP1I GCGC 2 cut(s) 40, 137
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 271, 583
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 92, 460, 562
HpyCH4III ACNGT 2 cut(s) 161, 181
HpyCH4V TGCA 4 cut(s) 67, 431, 530, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 615
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 2 cut(s) 40, 137
Ksp22I TGATCA 2 cut(s) 87, 474
Kzo9I GATC 4 cut(s) 87, 253, 279, 474
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 7 cut(s) 19, 106, 270, 416, 510, 593, 607
Lsp1109I GCAGC 2 cut(s) 272, 443
LweI GCATC 3 cut(s) 92, 124, 294
MaeI CTAG 2 cut(s) 45, 98
MaeIII GTNAC 2 cut(s) 148, 204
MalI GATC 4 cut(s) 89, 255, 281, 476
MboI GATC 4 cut(s) 87, 253, 279, 474
MboII GAAGA 2 cut(s) 313, 349
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 2 cut(s) 266, 559
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 8 cut(s) 28, 116, 119, 150, 179, 338, 365, 610
Mox20I TGGCCA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 492
MseI TTAA 3 cut(s) 380, 410, 646
MslI CAYNNNNRTG 4 cut(s) 159, 392, 482, 581
Msp20I TGGCCA 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 4 cut(s) 87, 253, 279, 474
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 148, 204
OliI CACNNNNGTG 2 cut(s) 159, 581
PagI TCATGA 1 cut(s) 270
PflMI CCANNNNNTGG 2 cut(s) 341, 499
PkrI GCNGC 4 cut(s) 262, 433, 436, 596
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 643
RsaI GTAC 2 cut(s) 407, 451
RsaNI GTAC 2 cut(s) 406, 450
RseI CAYNNNNRTG 4 cut(s) 159, 392, 482, 581
SaqAI TTAA 3 cut(s) 380, 410, 646
SatI GCNGC 4 cut(s) 261, 432, 435, 595
Sau3AI GATC 4 cut(s) 87, 253, 279, 474
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 69
SetI ASST 8 cut(s) 39, 241, 265, 455, 554, 573, 616, 640
SfaNI GCATC 3 cut(s) 92, 124, 294
SfcI CTRYAG 3 cut(s) 54, 157, 639
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 4 cut(s) 159, 392, 482, 581
Sse9I AATT 2 cut(s) 266, 559
SsiI CCGC 3 cut(s) 346, 435, 595
SspMI CTAG 2 cut(s) 45, 98
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 161, 181
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 266, 559
TatI WGTACW 1 cut(s) 405
TauI GCSGC 2 cut(s) 437, 597
Tru1I TTAA 3 cut(s) 380, 410, 646
Tru9I TTAA 3 cut(s) 380, 410, 646
TscAI CASTG 3 cut(s) 120, 166, 213
TseFI GTSAC 2 cut(s) 148, 204
TseI GCWGC 2 cut(s) 260, 431
Tsp45I GTSAC 2 cut(s) 148, 204
TspDTI ATGAA 5 cut(s) 259, 287, 313, 536, 589
TspRI CASTG 3 cut(s) 120, 166, 213
Van91I CCANNNNNTGG 2 cut(s) 341, 499
VneI GTGCAC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 125
XspI CTAG 2 cut(s) 45, 98
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.