FvH4_6g47723

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000247
Physical Location & Seq
Reverse (-)
36114914 .. 36116426
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47723.t1

Sequence Viewer

Length: 561 bp
ATGGAGGACGGCACTTCTGTTGACTCTCAACCTTTGCAAGTCAATGGAATGGAGGAGTTTGCGAATTGGGGAAGTTCTGTAATGACATTGCACAAATGCATTTTCTTTCTCATCACCATTTTAGGCCTTTGCCTCCAACTGAAGTTCACAACTGCGTCTCCATTTGTGATGGACTACAGAAACATTGTACTCATGAGGCTATTTATCATTGACATATCCGCGTACTGTGGATCATTTGGTGTCATGATACTCCAAACCAATCACAGTAACACAGACTTTGGTGAATTCATGAATAACATTAGCCTCTTGCTTGGAACTCTTGCTTCTATTTTAGAGTTGCTCATCCTGTTTCCGCCTTTCGGATGGGTCACGCTCTTCTTCTGGAGCATCAGTTTCGTTACCGTTGCGATCAAGTCATACCGATACTTGAAAACACTATGTGAAAGTGCAGTTGCCGGACTCAGTCGTGCTTATGAGAAATTGAAGGATCTGATCAAGAGGAGCCGCTATTCAACAGAGCATGATGAAACCAAGGACCAGAGCAAGAAGCTACCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.11

Weight (kDa)

6.28

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 221
AciI CCGC 3 cut(s) 219, 353, 505
AclWI GGATC 2 cut(s) 238, 495
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 161
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 189, 224
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 430, 484, 513
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 2 cut(s) 238, 495
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 535
AsuHPI GGTGA 2 cut(s) 106, 293
AvaII GGWCC 1 cut(s) 535
BccI CCATC 2 cut(s) 163, 357
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 531
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 342, 368
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 2 cut(s) 68, 514
BsgI GTGCAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 4 cut(s) 230, 408, 487, 492
BspACI CCGC 3 cut(s) 219, 353, 505
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 474
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 3 cut(s) 192, 243, 288
BspLI GGNNCC 1 cut(s) 503
BspPI GGATC 2 cut(s) 238, 495
BspQI GCTCTTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 4 cut(s) 230, 408, 487, 492
BssT1I CCWWGG 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 227, 266, 403
Bst6I CTCTTC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 461
BstF5I GGATG 2 cut(s) 342, 368
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 4 cut(s) 233, 411, 490, 495
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 4 cut(s) 230, 408, 487, 492
BstSFI CTRYAG 1 cut(s) 175
BstUI CGCG 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 342, 368
BtsIMutI CAGTG 1 cut(s) 561
CciI TCATGA 3 cut(s) 192, 243, 288
Cfr13I GGNCC 1 cut(s) 535
CseI GACGC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 188, 223
CviAII CATG 4 cut(s) 193, 244, 289, 521
CviJI RGCY 5 cut(s) 126, 199, 303, 504, 550
CviKI_1 RGCY 5 cut(s) 126, 199, 303, 504, 550
CviQI GTAC 2 cut(s) 188, 223
DdeI CTNAG 1 cut(s) 461
DpnI GATC 4 cut(s) 232, 410, 489, 494
DpnII GATC 4 cut(s) 230, 408, 487, 492
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 531
Eco147I AGGCCT 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 531
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 4 cut(s) 196, 247, 292, 524
FaiI YATR 8 cut(s) 194, 215, 245, 290, 418, 439, 474, 522
FatI CATG 4 cut(s) 192, 243, 288, 520
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 2 cut(s) 329, 375
Fsp4HI GCNGC 1 cut(s) 505
GluI GCNGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 456
HgaI GACGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 196, 247, 292, 524
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 23, 459
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 106, 293
Hpy166II GTNNAC 2 cut(s) 22, 147
Hpy188I TCNGA 2 cut(s) 362, 492
Hpy188III TCNNGA 5 cut(s) 193, 244, 289, 382, 496
Hpy8I GTNNAC 2 cut(s) 22, 147
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 3 cut(s) 227, 266, 403
HpyCH4V TGCA 4 cut(s) 37, 91, 99, 449
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 4 cut(s) 196, 247, 292, 524
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 230, 408, 487, 492
LguI GCTCTTC 1 cut(s) 380
LmnI GCTCC 2 cut(s) 384, 501
LpnPI CCDG 4 cut(s) 359, 367, 469, 551
LweI GCATC 1 cut(s) 396
MaeIII GTNAC 3 cut(s) 266, 367, 397
MalI GATC 4 cut(s) 232, 410, 489, 494
MboI GATC 4 cut(s) 230, 408, 487, 492
MboII GAAGA 2 cut(s) 367, 370
MflI RGATCY 1 cut(s) 487
MluCI AATT 3 cut(s) 64, 284, 479
MlyI GAGTC 2 cut(s) 17, 453
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 46, 143, 189, 314, 492
Mph1103I ATGCAT 1 cut(s) 101
MspI CCGG 1 cut(s) 456
MvnI CGCG 1 cut(s) 221
NdeII GATC 4 cut(s) 230, 408, 487, 492
NlaIII CATG 4 cut(s) 196, 247, 292, 524
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 101
PagI TCATGA 3 cut(s) 192, 243, 288
PceI AGGCCT 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 380
PflFI GACNNNGTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 506
PleI GAGTC 2 cut(s) 17, 453
PpsI GAGTC 2 cut(s) 17, 453
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 1 cut(s) 535
PsuI RGATCY 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 462
RsaI GTAC 2 cut(s) 189, 224
RsaNI GTAC 2 cut(s) 188, 223
SapI GCTCTTC 1 cut(s) 380
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 4 cut(s) 230, 408, 487, 492
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 2 cut(s) 17, 453
SetI ASST 2 cut(s) 34, 552
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 175
SinI GGWCC 1 cut(s) 535
Sse9I AATT 3 cut(s) 64, 284, 479
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 3 cut(s) 219, 353, 505
StuI AGGCCT 1 cut(s) 126
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 227, 266, 403
TasI AATT 3 cut(s) 64, 284, 479
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 507
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 277, 305, 540
TspRI CASTG 1 cut(s) 561
Tth111I GACNNNGTC 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.