RLG00000018055

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000247
Physical Location & Seq
Forward (+)
24907988 .. 24908670
683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018055

Sequence Viewer

Length: 558 bp
ATGGATCTTAACGATGCGGTTAATCCTCAGTATCAACAAAACAGCACAAGTCAAGAAGGTCACACTTATCCTGGAAAATTTTTGCACCAGTGTATTTTTTTACCAGTCATTGGCATTTTCGGATGGCTACTCCAACTGAAGTACACATCTGGTAATGCATCTCCATTCGTCACTGACTATGTCACCATGCTGATGTTTATCGTTGCTTTCTTTGTTTACTTTGGGTCCTTGACTGTGAAGCTATTAGCCCATGCTCCCAATTCAGACATGGGAGAGTTCATCAACAACATTAACTTCTTGTTCGGAACTCTGGCCTCTGTTTTGCTACTGCTTATCCTTGTTCGAGCTTTCGGGTTGTTTGCCCTCCTCTTATGGACGGTTTATCTTGTGAGGGATGTTGCAACTAAAAAGTCCTACAGGAATGCAGTTTGTGATGTCTACAACAAAGTAAAAGAGATGATTAATGGTCACTTGGTGGAGATTAATGCTGTACAACCCCAACCCCGGCCACATATTGTTGTACAAATCCAAGATGCAGGAGAACCGAATGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.77

Weight (kDa)

6.49

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 3 cut(s) 143, 492, 522
AfiI CCNNNNNNNGG 2 cut(s) 110, 504
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 241, 347
AluI AGCT 2 cut(s) 241, 347
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 312, 506
ApoI RAATTY 1 cut(s) 77
AseI ATTAAT 2 cut(s) 462, 483
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 225
BccI CCATC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 505
BfmI CTRYAG 1 cut(s) 415
Bme1390I CCNGG 2 cut(s) 72, 505
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 72, 505
BmsI GCATC 3 cut(s) 4, 167, 523
BpuMI CCSGG 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 504
Bse1I ACTGG 2 cut(s) 88, 104
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 2 cut(s) 128, 400
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 110, 504
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 88, 104
BseRI GAGGAG 1 cut(s) 356
BshFI GGCC 2 cut(s) 314, 508
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 2 cut(s) 110, 504
BsmI GAATGC 2 cut(s) 427, 553
BsnI GGCC 2 cut(s) 314, 508
Bsp1407I TGTACA 2 cut(s) 490, 520
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 314, 508
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 2 cut(s) 490, 520
BsrI ACTGG 2 cut(s) 88, 104
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 235, 379
BstAUI TGTACA 2 cut(s) 490, 520
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 128, 400
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 70, 503
BstSFI CTRYAG 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 314, 508
BtsCI GGATG 2 cut(s) 128, 400
BtsIMutI CAGTG 2 cut(s) 95, 171
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 142, 491, 521
CviAII CATG 3 cut(s) 187, 251, 268
CviJI RGCY 6 cut(s) 127, 241, 248, 314, 347, 508
CviKI_1 RGCY 6 cut(s) 127, 241, 248, 314, 347, 508
CviQI GTAC 3 cut(s) 142, 491, 521
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 190, 254, 271
FaiI YATR 6 cut(s) 180, 188, 252, 269, 373, 513
FatI CATG 3 cut(s) 186, 250, 267
FblI GTMKAC 1 cut(s) 438
FokI GGATG 2 cut(s) 135, 407
HaeIII GGCC 2 cut(s) 314, 508
HapII CCGG 1 cut(s) 505
Hin1II CATG 3 cut(s) 190, 254, 271
HpaII CCGG 1 cut(s) 505
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 144, 217, 439
Hpy188I TCNGA 3 cut(s) 122, 265, 305
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 3 cut(s) 144, 217, 439
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 235, 379
HpyCH4V TGCA 5 cut(s) 85, 158, 401, 425, 536
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 190, 254, 271
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 57, 84, 101, 117, 135, 296, 403, 518, 522
LweI GCATC 3 cut(s) 4, 167, 523
MaeIII GTNAC 4 cut(s) 59, 169, 181, 467
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 77, 259
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 36, 325, 374, 377, 384
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 5 cut(s) 9, 21, 291, 462, 483
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 72, 505
Mva1269I GAATGC 2 cut(s) 427, 553
MvaI CCWGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 505
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 190, 254, 271
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 4 cut(s) 59, 169, 181, 467
NsiI ATGCAT 1 cut(s) 160
PctI GAATGC 2 cut(s) 427, 553
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 225
PshBI ATTAAT 2 cut(s) 462, 483
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 225
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 3 cut(s) 143, 492, 522
RsaNI GTAC 3 cut(s) 142, 491, 521
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 5 cut(s) 9, 21, 291, 462, 483
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 72, 505
SetI ASST 3 cut(s) 61, 243, 349
SfaNI GCATC 3 cut(s) 4, 167, 523
SfcI CTRYAG 1 cut(s) 415
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 2 cut(s) 77, 259
SsiI CCGC 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 70, 503
TaaI ACNGT 2 cut(s) 235, 379
TaqI TCGA 1 cut(s) 343
TasI AATT 2 cut(s) 77, 259
TatI WGTACW 3 cut(s) 141, 490, 520
Tru1I TTAA 5 cut(s) 9, 21, 291, 462, 483
Tru9I TTAA 5 cut(s) 9, 21, 291, 462, 483
TscAI CASTG 2 cut(s) 95, 178
TseFI GTSAC 4 cut(s) 59, 169, 181, 467
Tsp45I GTSAC 4 cut(s) 59, 169, 181, 467
TspDTI ATGAA 1 cut(s) 268
TspRI CASTG 2 cut(s) 95, 178
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 2 cut(s) 462, 483
XapI RAATTY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.