RLG00000021644

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000247
Physical Location & Seq
Reverse (-)
76946696 .. 76947187
492 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021644

Sequence Viewer

Length: 492 bp
ATGTTAGGCATGCCCCTCCAGCTCAATTTCACAGCCGCATGCCAAAATGACAATGCCCCTCCATTTGTGACAGAATACGCCACTATACTGATGACGCTATTTATTGTTGCATTAGTCATTTACATAGGGTCATTGGCTAGTGTCAAGATACTCCAACCCGATCAATCCAACTCCGCTCGGATTTGGGGGAAACTCGTGAATAGTATTAGCATCTACTGTGGAACTCTTGCCTTGATTTTACAATTGCTTACCCTTATTCAAGCTTTCGGATGGCTCACCTTCATTTTCTGGTGCATCTTTCTATTGACCGTTGTGACCAAGTCATACCACTACTTGAGAACTCTCCAAGAAAACGACTTGATCCTCGTGACTGTAGCCCACTTAAAAGGGTACCTCAGAAGATTGTACTATGGTACCACTGGAGGGGTTATTCATGCCTTTCACAAAATGCAGCAGAAGCTGATCACCAGGAATGACCACTCGACCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.46

Weight (kDa)

9.05

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 390, 413
AccB1I GGYRCC 2 cut(s) 390, 413
AccBSI CCGCTC 1 cut(s) 176
AciI CCGC 2 cut(s) 36, 174
AclWI GGATC 1 cut(s) 355
AfaI GTAC 3 cut(s) 392, 407, 415
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 1 cut(s) 467
AluBI AGCT 3 cut(s) 22, 263, 460
AluI AGCT 3 cut(s) 22, 263, 460
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 451
Asp718I GGTACC 2 cut(s) 390, 413
AsuHPI GGTGA 2 cut(s) 268, 457
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BanI GGYRCC 2 cut(s) 390, 413
BauI CACGAG 2 cut(s) 194, 365
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 469
BclI TGATCA 1 cut(s) 462
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 36, 452
BlsI GCNGC 2 cut(s) 37, 453
Bme1390I CCNGG 1 cut(s) 469
BmiI GGNNCC 2 cut(s) 392, 415
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 2 cut(s) 219, 303
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 469
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 409
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 486
BshNI GGYRCC 2 cut(s) 390, 413
BsiEI CGRYCG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 423
Bsp143I GATC 3 cut(s) 160, 360, 462
BspACI CCGC 2 cut(s) 36, 174
BspCNI CTCAG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 392, 415
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 2 cut(s) 390, 413
BsrBI CCGCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 424
BssMI GATC 3 cut(s) 160, 360, 462
BssSI CACGAG 2 cut(s) 194, 365
Bst2BI CACGAG 2 cut(s) 194, 365
Bst2UI CCWGG 1 cut(s) 469
Bst4CI ACNGT 3 cut(s) 218, 310, 373
BstC8I GCNNGC 2 cut(s) 11, 40
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 3 cut(s) 163, 363, 465
BstMBI GATC 3 cut(s) 160, 360, 462
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 2 cut(s) 19, 457
BstNI CCWGG 1 cut(s) 469
BstNSI RCATGY 2 cut(s) 13, 42
BstSCI CCNGG 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 463
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 11, 40
CaiI CAGNNNCTG 1 cut(s) 460
CseI GACGC 1 cut(s) 103
Csp6I GTAC 3 cut(s) 391, 406, 414
CviAII CATG 3 cut(s) 10, 39, 434
CviJI RGCY 7 cut(s) 22, 35, 137, 263, 274, 377, 460
CviKI_1 RGCY 7 cut(s) 22, 35, 137, 263, 274, 377, 460
CviQI GTAC 3 cut(s) 391, 406, 414
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 162, 362, 464
DpnII GATC 3 cut(s) 160, 360, 462
EcoRII CCWGG 1 cut(s) 467
FaeI CATG 3 cut(s) 13, 42, 437
FaiI YATR 7 cut(s) 11, 40, 86, 125, 325, 411, 435
FatI CATG 3 cut(s) 9, 38, 433
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 36, 452
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 36, 452
FspBI CTAG 1 cut(s) 138
GluI GCNGC 2 cut(s) 36, 452
GsuI CTGGAG 1 cut(s) 441
HgaI GACGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 13, 42, 437
HindIII AAGCTT 1 cut(s) 261
HphI GGTGA 2 cut(s) 268, 457
Hpy188I TCNGA 3 cut(s) 180, 269, 398
Hpy188III TCNNGA 3 cut(s) 145, 196, 367
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 3 cut(s) 218, 310, 373
HpyCH4V TGCA 3 cut(s) 110, 294, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 457
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 3 cut(s) 13, 42, 437
KpnI GGTACC 2 cut(s) 394, 417
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 3 cut(s) 160, 360, 462
LpnPI CCDG 5 cut(s) 32, 274, 405, 454, 481
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 2 cut(s) 219, 303
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 67, 313, 367
MalI GATC 3 cut(s) 162, 362, 464
MbiI CCGCTC 1 cut(s) 176
MboI GATC 3 cut(s) 160, 360, 462
MboII GAAGA 1 cut(s) 411
MfeI CAATTG 1 cut(s) 242
MluCI AATT 2 cut(s) 25, 242
MmeI TCCRAC 2 cut(s) 178, 192
MnlI CCTC 5 cut(s) 26, 69, 374, 404, 416
MseI TTAA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 469
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 469
MwoI GCNNNNNNNGC 2 cut(s) 19, 457
NdeII GATC 3 cut(s) 160, 360, 462
NlaIII CATG 3 cut(s) 13, 42, 437
NlaIV GGNNCC 2 cut(s) 392, 415
NmuCI GTSAC 3 cut(s) 67, 313, 367
NspI RCATGY 2 cut(s) 13, 42
PaeI GCATGC 2 cut(s) 13, 42
PflFI GACNNNGTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 37, 453
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 2 cut(s) 392, 415
PstNI CAGNNNCTG 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 319
RsaI GTAC 3 cut(s) 392, 407, 415
RsaNI GTAC 3 cut(s) 391, 406, 414
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 2 cut(s) 36, 452
Sau3AI GATC 3 cut(s) 160, 360, 462
ScrFI CCNGG 1 cut(s) 469
SetI ASST 5 cut(s) 24, 265, 281, 396, 462
SfaNI GCATC 2 cut(s) 219, 303
SfcI CTRYAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SphI GCATGC 2 cut(s) 13, 42
Sse9I AATT 2 cut(s) 25, 242
SsiI CCGC 2 cut(s) 36, 174
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 467
TaaI ACNGT 3 cut(s) 218, 310, 373
TaqI TCGA 1 cut(s) 482
TasI AATT 2 cut(s) 25, 242
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 3 cut(s) 67, 313, 367
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 3 cut(s) 67, 313, 367
TspDTI ATGAA 2 cut(s) 271, 422
TspRI CASTG 1 cut(s) 424
Tth111I GACNNNGTC 1 cut(s) 319
XceI RCATGY 2 cut(s) 13, 42
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.