pycom08g18530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000247
Physical Location & Seq
Forward (+)
18666892 .. 18667657
766 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18530.1

Sequence Viewer

Length: 540 bp
ATGGAGGCAAAGGACGGGGCTGGGAATCATCGGGAGGGAGATGGGAGAAGCACTAGGGAGGAGGGTGGTCAGTACAAATCTCTACCGTCAGTACACAAATATATATTCTTTCTCCTCACCAAGCTAGGAGTCCTGCTCCAGGTGAAGTGCGCGACTGGAAATTTGCCGTCTCCATTTGTCACAAACCACAACACTGTTGTGATGTTGATTGTTGATTTATTCGCTTACACGGCGGCATTGGCGACTGTCAAGATTCTCCAAGCTTCCAACAGTACAAATGTGTATGAATTGACGAACAACATCAGCCTCTTGTGTGGAACTCTTGCGTCGATTCTACTGGTGCGCCTCCTCGTTCCAGCTTTCGGGTGGTTTACTCTTGCATGTTGGGCCGTATATTTTGTGATAATTGTGACCAAGTCCTACCGAACTCGAAGAAGACTGTGTAGTGCAGCTGTTTGTTATGTCCGTGGCAAAATAGAGGAGCTGATGATGAGATTGAAGGGCGCCGAAGAACCCCAGAACCAGAACGGAATGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.82

Weight (kDa)

9.3

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AccII CGCG 1 cut(s) 152
AciI CCGC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 74, 93, 274
AfiI CCNNNNNNNGG 2 cut(s) 139, 362
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 1 cut(s) 138
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 5 cut(s) 124, 263, 359, 452, 484
AluI AGCT 5 cut(s) 124, 263, 359, 452, 484
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspLEI GCGC 3 cut(s) 152, 345, 506
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 109, 154
BanI GGYRCC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 461
BccI CCATC 1 cut(s) 35
BceAI ACGGC 3 cut(s) 151, 246, 374
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 54, 125
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 2 cut(s) 234, 450
BlsI GCNGC 2 cut(s) 235, 451
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 362
Bse1I ACTGG 2 cut(s) 160, 342
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 139, 362
BseNI ACTGG 2 cut(s) 160, 342
BseRI GAGGAG 4 cut(s) 74, 104, 338, 494
BseXI GCAGC 1 cut(s) 461
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 139, 362
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 1 cut(s) 389
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 389
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 160, 342
BssECI CCNNGG 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 5 cut(s) 87, 196, 247, 272, 441
BstACI GRCGYC 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 466
BstENI CCTNNNNNAGG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 3 cut(s) 152, 345, 506
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 230, 239, 386
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 138
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 192
CfoI GCGC 3 cut(s) 152, 345, 506
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 315
Csp6I GTAC 3 cut(s) 73, 92, 273
CviAII CATG 1 cut(s) 381
CviJI RGCY 8 cut(s) 20, 124, 263, 306, 359, 389, 452, 484
CviKI_1 RGCY 8 cut(s) 20, 124, 263, 306, 359, 389, 452, 484
CviQI GTAC 3 cut(s) 73, 92, 273
DinI GGCGCC 1 cut(s) 505
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 505
EheI GGCGCC 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 384
FaiI YATR 6 cut(s) 102, 104, 285, 382, 394, 462
FatI CATG 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 234, 450
Fsp4HI GCNGC 2 cut(s) 234, 450
FspBI CTAG 2 cut(s) 54, 125
GlaI GCGC 3 cut(s) 151, 344, 505
GluI GCNGC 2 cut(s) 234, 450
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 1 cut(s) 389
HgaI GACGC 1 cut(s) 315
HhaI GCGC 3 cut(s) 152, 345, 506
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 1 cut(s) 384
Hin6I GCGC 3 cut(s) 150, 343, 504
HinP1I GCGC 3 cut(s) 150, 343, 504
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 4 cut(s) 25, 129, 253, 331
HphI GGTGA 2 cut(s) 109, 154
Hpy166II GTNNAC 2 cut(s) 94, 372
Hpy188III TCNNGA 2 cut(s) 32, 250
Hpy8I GTNNAC 2 cut(s) 94, 372
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 5 cut(s) 87, 196, 247, 272, 441
HpyCH4V TGCA 2 cut(s) 380, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 239, 386
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 1 cut(s) 384
HspAI GCGC 3 cut(s) 150, 343, 504
KasI GGCGCC 1 cut(s) 503
LmnI GCTCC 2 cut(s) 141, 481
LpnPI CCDG 9 cut(s) 6, 125, 141, 146, 152, 323, 369, 530, 536
Lsp1109I GCAGC 1 cut(s) 461
MaeI CTAG 2 cut(s) 54, 125
MaeIII GTNAC 2 cut(s) 178, 409
MboII GAAGA 3 cut(s) 444, 447, 521
MluCI AATT 3 cut(s) 160, 287, 405
Mly113I GGCGCC 1 cut(s) 504
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 8 cut(s) 28, 52, 55, 125, 317, 356, 359, 472
MseI TTAA 1 cut(s) 538
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 230, 239, 386
NarI GGCGCC 1 cut(s) 504
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 178, 409
NspI RCATGY 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 197
PctI GAATGC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 25, 253, 331
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 2 cut(s) 235, 451
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 74, 93, 274
RsaNI GTAC 3 cut(s) 73, 92, 273
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 2 cut(s) 234, 450
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 140
SetI ASST 6 cut(s) 126, 144, 265, 361, 454, 486
SfoI GGCGCC 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 3 cut(s) 160, 287, 405
SsiI CCGC 1 cut(s) 233
SspDI GGCGCC 1 cut(s) 503
SspMI CTAG 2 cut(s) 54, 125
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 5 cut(s) 87, 196, 247, 272, 441
TaqI TCGA 2 cut(s) 329, 430
TasI AATT 3 cut(s) 160, 287, 405
TatI WGTACW 3 cut(s) 72, 91, 272
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 25, 253, 331
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 178, 409
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 2 cut(s) 178, 409
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 1 cut(s) 160
XceI RCATGY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XspI CTAG 2 cut(s) 54, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.