Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

36121041 .. 36122235

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47732.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAAATCTCAAATACTGAATTGAAAACGAACCCAGATGGCATAGAAAGAAAGGGCAACAAAATAGAGGAGTTTGCAAATTGGAGAAGTTCTGTAATGGCATTGCACAAATGCATTTTCTTTCTCATCACCATTTTAGGCCTTTGCCTCCAACTGAAGTTCACAACTGCGTCTCCATTTGTGCTGGACTACAGACACATTGTACTCATGAGGCTATTTATCATTGACATATCTGCTTACTGTGGATCATTTGGTGTCATGATTATCCAAACCAATCACAGTAATACAGACTTCGTTGAATTCATGAATAACATTAGCCTATTGCTTGGAACTCTTGCTTCTATTTTGGAGTTGCTCATCTTGTTTCCGCCTTTCGGATGGGTCACACTCTTCTTCTGGAGCATCTGTTTCGTTACCCTTGCGATCAAGTCATACCAATACTCTAAAACACTATGTGAAAGTGCAGTTGCAGCTCTTGTTGTAACCTTGGGTGAATTCCAAGTAGTAAAGCTGATGAAGGGCAGCTTGATGGGAAGTAGCGCAGTACTTGGTCGTGCTTATGACAAATTGAAGGATCTGATCAAGAGGAGGCGTTCTTCGGCAAACCATGATGAAACCAAGGACCAGAACAAGGAGCTACCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

216

Amino Acids

24.3

Weight (kDa)

8.95

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	253, 582
AcsI	RAATTY	2 cut(s)	299, 494
AcuI	CTGAAG	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	204, 546
AfiI	CCNNNNNNNGG	2 cut(s)	374, 631
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	25, 299, 571
AluBI	AGCT	4 cut(s)	473, 511, 525, 637
AluI	AGCT	4 cut(s)	473, 511, 525, 637
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	253, 582
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	470, 522
ApoI	RAATTY	2 cut(s)	299, 494
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	121, 503
AvaII	GGWCC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	482, 534
BccI	CCATC	3 cut(s)	32, 372, 523
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BclI	TGATCA	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	471, 523
BlsI	GCNGC	2 cut(s)	472, 524
BmcAI	AGTACT	1 cut(s)	546
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmsI	GCATC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	486, 618
BsaWI	WCCGGW	1 cut(s)	640
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 391, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 631
Bse118I	RCCGGY	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	486, 618
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	374, 631
BseMI	GCAATG	1 cut(s)	101
BseRI	GAGGAG	2 cut(s)	83, 601
BseXI	GCAGC	2 cut(s)	482, 534
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	141
BshTI	ACCGGT	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	374, 631
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	245, 423, 574, 579
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	141
BspHI	TCATGA	3 cut(s)	207, 258, 303
BspPI	GGATC	2 cut(s)	253, 582
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	486, 618
BssMI	GATC	4 cut(s)	245, 423, 574, 579
BssT1I	CCWWGG	2 cut(s)	486, 618
Bst4CI	ACNGT	2 cut(s)	242, 281
Bst6I	CTCTTC	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	248, 426, 577, 582
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	4 cut(s)	245, 423, 574, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	482, 534
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	383
CciI	TCATGA	3 cut(s)	207, 258, 303
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	622
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	203, 545
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	4 cut(s)	208, 259, 304, 608
CviJI	RGCY	7 cut(s)	141, 214, 318, 473, 511, 525, 637
CviKI_1	RGCY	7 cut(s)	141, 214, 318, 473, 511, 525, 637
CviQI	GTAC	2 cut(s)	203, 545
DpnI	GATC	4 cut(s)	247, 425, 576, 581
DpnII	GATC	4 cut(s)	245, 423, 574, 579
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	486, 618
Eco147I	AGGCCT	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	299, 494
EcoT14I	CCWWGG	2 cut(s)	486, 618
EcoT22I	ATGCAT	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	486, 618
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	4 cut(s)	211, 262, 307, 611
FaiI	YATR	9 cut(s)	44, 209, 230, 260, 305, 433, 454, 561, 609
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	4 cut(s)	207, 258, 303, 607
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	471, 523
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	471, 523
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	2 cut(s)	471, 523
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	641
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	211, 262, 307, 611
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	2 cut(s)	121, 503
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	377, 579
Hpy188III	TCNNGA	5 cut(s)	208, 259, 304, 397, 583
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	511, 565
HpyCH4III	ACNGT	2 cut(s)	242, 281
HpyCH4V	TGCA	5 cut(s)	77, 106, 114, 464, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
Hsp92II	CATG	4 cut(s)	211, 262, 307, 611
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	245, 423, 574, 579
LmnI	GCTCC	2 cut(s)	399, 634
LpnPI	CCDG	4 cut(s)	48, 170, 382, 638
Lsp1109I	GCAGC	2 cut(s)	482, 534
LweI	GCATC	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	382, 412, 481
MalI	GATC	4 cut(s)	247, 425, 576, 581
MboI	GATC	4 cut(s)	245, 423, 574, 579
MboII	GAAGA	3 cut(s)	382, 385, 588
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	5 cut(s)	20, 79, 299, 494, 566
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	5 cut(s)	61, 158, 204, 579, 582
Mph1103I	ATGCAT	1 cut(s)	116
MspI	CCGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	4 cut(s)	245, 423, 574, 579
NlaIII	CATG	4 cut(s)	211, 262, 307, 611
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	116
PagI	TCATGA	3 cut(s)	207, 258, 303
PceI	AGGCCT	1 cut(s)	141
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	472, 524
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	2 cut(s)	204, 546
RsaNI	GTAC	2 cut(s)	203, 545
SatI	GCNGC	2 cut(s)	471, 523
Sau3AI	GATC	4 cut(s)	245, 423, 574, 579
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	1 cut(s)	546
SetI	ASST	5 cut(s)	475, 488, 513, 527, 639
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	622
Sse9I	AATT	5 cut(s)	20, 79, 299, 494, 566
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	1 cut(s)	368
StuI	AGGCCT	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	486, 618
TaaI	ACNGT	2 cut(s)	242, 281
TasI	AATT	5 cut(s)	20, 79, 299, 494, 566
TatI	WGTACW	2 cut(s)	202, 544
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	2 cut(s)	470, 522
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	5 cut(s)	17, 292, 320, 530, 627
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	299, 494
ZrmI	AGTACT	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.