Rroxscaffold_2G00083970

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
6502692 .. 6503162
471 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00083970.1

Sequence Viewer

Length: 471 bp
ATGGATCAGAGTTCACTTCTCAACAGTTCTACAGGGGCATTACACGGTTGCGTTGTTTCTCTCATCACCATCTTGGGCTTTTGCCTCCCACTCAAGTTTGCAAATGCATCTCCATTTGAGACCAACTACGGCAGTGTGCTGATGACTCTGTTTATTATGGTCTCAGTCATTTACTTTGGGACTCTATCTTTCATGATAATCCTAGTTGCCCGCAAGAATGCAGTTATCGGAGAGTTCATGAACAAGATGAGCCTTTTGTTTGGAAGTCTTGCCTTTATTTTAGAATTGCTCATCCTTGTTCAACCTTTTGGATGGGTCATGTTCTTCATCTGGAGCATCTGTTTTTTAAGCGTTGTGATTAGCTCGTACCAATTGTTGAAAGGACTGTATGGAACTGCAATCGCAGGTCTTCATAATCGCTCCCGTGAATTGAAAGACAAGTTGATTGAGCTGAATGGCCGCTTTTTCTAG

Protein Analysis

156

Amino Acids

17.37

Weight (kDa)

8.88

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 395
AciI CCGC 2 cut(s) 211, 460
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 457
AfaI GTAC 1 cut(s) 368
AgsI TTSAA 3 cut(s) 302, 379, 433
AluBI AGCT 2 cut(s) 363, 451
AluI AGCT 2 cut(s) 363, 451
Alw26I GTCTC 2 cut(s) 113, 166
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 401
BccI CCATC 2 cut(s) 77, 306
BceAI ACGGC 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 113, 166
BfaI CTAG 2 cut(s) 203, 469
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
BmsI GCATC 2 cut(s) 116, 345
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 77
BsaI GGTCTC 2 cut(s) 113, 166
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
BseGI GGATG 2 cut(s) 291, 317
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 459
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 113, 166
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 2 cut(s) 113, 166
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 211, 460
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 2 cut(s) 192, 237
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 2 cut(s) 113, 166
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 3 cut(s) 26, 47, 387
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 291, 317
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 113, 166
BstMBI GATC 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 401
BsuRI GGCC 1 cut(s) 459
BtsCI GGATG 2 cut(s) 291, 317
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 2 cut(s) 192, 237
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 193, 238, 319
CviJI RGCY 5 cut(s) 78, 252, 363, 451, 459
CviKI_1 RGCY 5 cut(s) 78, 252, 363, 451, 459
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 457
Eco31I GGTCTC 2 cut(s) 113, 166
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 3 cut(s) 196, 241, 322
FaiI YATR 6 cut(s) 158, 194, 239, 320, 390, 414
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 192, 237, 318
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 2 cut(s) 278, 324
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 2 cut(s) 203, 469
GluI GCNGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 1 cut(s) 459
Hin1II CATG 3 cut(s) 196, 241, 322
HinfI GANTC 2 cut(s) 145, 181
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 9, 230
Hpy188III TCNNGA 3 cut(s) 193, 238, 331
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4III ACNGT 3 cut(s) 26, 47, 387
HpyCH4V TGCA 4 cut(s) 101, 107, 221, 398
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 3 cut(s) 196, 241, 322
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 333, 425
LpnPI CCDG 3 cut(s) 18, 316, 390
LweI GCATC 2 cut(s) 116, 345
MaeI CTAG 2 cut(s) 203, 469
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 316, 401
MfeI CAATTG 1 cut(s) 371
MluCI AATT 3 cut(s) 284, 371, 428
MlyI GAGTC 2 cut(s) 139, 175
MnlI CCTC 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 347
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 223
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 196, 241, 322
NsiI ATGCAT 1 cut(s) 109
PagI TCATGA 2 cut(s) 192, 237
PctI GAATGC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 2 cut(s) 139, 175
PpsI GAGTC 2 cut(s) 139, 175
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 2 cut(s) 139, 175
SetI ASST 4 cut(s) 307, 365, 409, 453
SfaNI GCATC 2 cut(s) 116, 345
SfcI CTRYAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 284, 371, 428
SsiI CCGC 2 cut(s) 211, 460
SspMI CTAG 2 cut(s) 203, 469
TaaI ACNGT 3 cut(s) 26, 47, 387
TasI AATT 3 cut(s) 284, 371, 428
TauI GCSGC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 5 cut(s) 181, 226, 254, 316, 401
TspRI CASTG 1 cut(s) 139
XspI CTAG 2 cut(s) 203, 469
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.