Rmu_sc0000768.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000768.1
OG0000247
Physical Location & Seq
Reverse (-)
99834 .. 100322
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000768.1_g000029.1.cds

Sequence Viewer

Length: 489 bp
atgctaggaattctccttcaagtgaagcaggcaaccgggagtaaatctccatttgtcacagaccacgttacaatgctgacctttgttgccgttttcttgatctatatctggtcattggcaacttacaagttatgtcactttcccaccacagatttggccgatttcatggacaacattagcctcttctttggatcacttgctccgatcttactactgcttgtcctcgttcaagctttcgggttgttcaccctcggtttgtggatcctgtactttcttagagactttctaactaagaaatcatacagaagggcacttgtttatgtcttgaaaaaagtgcaagagctgtttaaaggccaagaacaaaatgaggcagagaatattgtaggattacaagaagcaggagagaagagtgctgtacaaatacaagaagcaagagaacggaaagttgatgaaaacaaaatggaggagctgcagaatggactaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.48

Weight (kDa)

6.12

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 199, 256, 269
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 2 cut(s) 269, 417
AgsI TTSAA 3 cut(s) 20, 230, 328
AluBI AGCT 3 cut(s) 233, 343, 469
AluI AGCT 3 cut(s) 233, 343, 469
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 3 cut(s) 199, 256, 269
AoxI GGCC 2 cut(s) 156, 352
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 313
BamHI GGATCC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 456
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 470
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 456
BshFI GGCC 2 cut(s) 158, 354
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 158, 354
Bsp1286I GDGCHC 1 cut(s) 313
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 4 cut(s) 99, 191, 204, 261
BspANI GGCC 2 cut(s) 158, 354
BspLI GGNNCC 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 3 cut(s) 199, 256, 269
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 4 cut(s) 99, 191, 204, 261
Bst6I CTCTTC 2 cut(s) 188, 401
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 275, 291
BstKTI GATC 4 cut(s) 102, 194, 207, 264
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 4 cut(s) 99, 191, 204, 261
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 2 cut(s) 158, 354
Cac8I GCNNGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 268, 416
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 158, 180, 233, 343, 354, 469
CviKI_1 RGCY 6 cut(s) 158, 180, 233, 343, 354, 469
CviQI GTAC 2 cut(s) 268, 416
DdeI CTNAG 2 cut(s) 275, 291
DpnI GATC 4 cut(s) 101, 193, 206, 263
DpnII GATC 4 cut(s) 99, 191, 204, 261
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 188, 401
EarI CTCTTC 2 cut(s) 188, 401
EcoRI GAATTC 1 cut(s) 9
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 105, 133, 167, 301, 321
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 470
HaeIII GGCC 2 cut(s) 158, 354
HapII CCGG 1 cut(s) 36
Hin1II CATG 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 231
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 97, 325
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 26, 300
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 337, 472
HpyF3I CTNAG 2 cut(s) 275, 291
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 4 cut(s) 99, 191, 204, 261
LmnI GCTCC 2 cut(s) 205, 466
LpnPI CCDG 5 cut(s) 14, 49, 94, 278, 384
Lsp1109I GCAGC 1 cut(s) 456
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 55, 67, 134
MalI GATC 4 cut(s) 101, 193, 206, 263
MboI GATC 4 cut(s) 99, 191, 204, 261
MboII GAAGA 2 cut(s) 175, 418
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 9
MnlI CCTC 5 cut(s) 191, 233, 260, 361, 457
MseI TTAA 1 cut(s) 348
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
NciI CCSGG 1 cut(s) 37
NdeII GATC 4 cut(s) 99, 191, 204, 261
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 55, 134
PkrI GCNGC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 2 cut(s) 269, 417
RsaNI GTAC 2 cut(s) 268, 416
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 4 cut(s) 99, 191, 204, 261
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 69, 83, 235, 345, 471
SfcI CTRYAG 1 cut(s) 470
Sse9I AATT 1 cut(s) 9
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 35
TaiI ACGT 1 cut(s) 69
TasI AATT 1 cut(s) 9
TatI WGTACW 2 cut(s) 267, 415
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 2 cut(s) 55, 134
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 2 cut(s) 55, 134
TspDTI ATGAA 2 cut(s) 154, 465
TspGWI ACGGA 1 cut(s) 454
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.