Rroxscaffold_2G00084190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000247
Physical Location & Seq
Forward (+)
6680599 .. 6682152
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084190.1

Sequence Viewer

Length: 654 bp
ATGAAGCCACAACGAATAAACGTCTCAGAAGACCGAAGAAACTTAAACTTCCGACGCCCTGGAATGGCAGGAGCAGATAACACTGCTCCCAGTTCACAAGGGTGCAGGGAGGAGGTTCAGAGTTCTCAAGGGGCGTTGCACCAATATAATTTTACTCTCCTCGCCATGCTAGGAATTCTCCTTCAAGTGAAGCAGGCAACCGGGAGTAAATCTCCATTTGTCACAGACCACGTTACAATGCTGACCTTTGTTGCTGTTTTCTTGATCTATATCTGGTCATTGGCAACTTACAAGTTATGTCACTTTCCCACCACAGATTTGGCCGATTTCATGGACAACATTAGCCTCTTCTTTGGATCACTTGCTCCAATCTTACTATTGCTTGTCCTCGTTCAAGCTTTCGGGTTGTTCACCCTCGGTTTGTGGTTCCTGTACTTTCTTAGAGACTTTCTAACTAAGAAATCATACAGAAGGGCACTTGTTTATGTTTTGAAAAAAGTGCAAGAGCTGTTTAAAGGCCAAGAACAAAATGAGGCAGAGAATATTGTAGGATTACAAGAAGCAGGAGAGGAGAGTGCTGTACAAATACAAGAAGCAGGAGAACGGAACGTTGATGAAAATAAAATGGAGGAGCTGCAGAATGGACTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.53

Weight (kDa)

5.67

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 609
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 2 cut(s) 434, 582
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 185, 395, 493
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 100
AluBI AGCT 3 cut(s) 398, 508, 634
AluI AGCT 3 cut(s) 398, 508, 634
Alw26I GTCTC 2 cut(s) 28, 438
AlwI GGATC 1 cut(s) 364
AoxI GGCC 2 cut(s) 321, 517
ApeKI GCWGC 1 cut(s) 634
ApoI RAATTY 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 621
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 28, 438
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 635
BisI GCNGC 1 cut(s) 635
BlsI GCNGC 1 cut(s) 636
Bme1390I CCNGG 2 cut(s) 60, 202
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 60, 202
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpuEI CTTGAG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 58, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 269
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 58, 415
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 4 cut(s) 125, 149, 584, 644
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 1 cut(s) 621
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 2 cut(s) 323, 519
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 28, 438
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 323, 519
Bsp1286I GDGCHC 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 580
Bsp143I GATC 2 cut(s) 264, 356
BspANI GGCC 2 cut(s) 323, 519
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 639
BspPI GGATC 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 580
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 58, 415
BssMI GATC 2 cut(s) 264, 356
BssNI GRCGYC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 580
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 25, 440, 456
BstKTI GATC 2 cut(s) 267, 359
BstMAI GTCTC 2 cut(s) 28, 438
BstMBI GATC 2 cut(s) 264, 356
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 58, 200
BstSFI CTRYAG 1 cut(s) 635
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 1 cut(s) 621
BstV2I GAAGAC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuRI GGCC 2 cut(s) 323, 519
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 195
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 433, 581
CviAII CATG 2 cut(s) 166, 331
CviJI RGCY 7 cut(s) 7, 323, 345, 398, 508, 519, 634
CviKI_1 RGCY 7 cut(s) 7, 323, 345, 398, 508, 519, 634
CviQI GTAC 2 cut(s) 433, 581
DdeI CTNAG 3 cut(s) 25, 440, 456
DpnI GATC 2 cut(s) 266, 358
DpnII GATC 2 cut(s) 264, 356
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 169, 334
FaiI YATR 7 cut(s) 147, 167, 270, 298, 332, 466, 486
FatI CATG 2 cut(s) 165, 330
Fnu4HI GCNGC 1 cut(s) 635
Fsp4HI GCNGC 1 cut(s) 635
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 635
HaeIII GGCC 2 cut(s) 323, 519
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 2 cut(s) 169, 334
HindIII AAGCTT 1 cut(s) 396
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 95, 411
Hpy188I TCNGA 3 cut(s) 28, 53, 120
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 2 cut(s) 95, 411
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 191, 465
HpyCH4IV ACGT 3 cut(s) 21, 231, 609
HpyCH4V TGCA 4 cut(s) 105, 139, 502, 637
HpyF3I CTNAG 3 cut(s) 25, 440, 456
HpySE526I ACGT 3 cut(s) 21, 231, 609
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 2 cut(s) 169, 334
Kzo9I GATC 2 cut(s) 264, 356
LmnI GCTCC 4 cut(s) 71, 91, 370, 631
Lsp1109I GCAGC 1 cut(s) 621
MaeI CTAG 1 cut(s) 170
MaeII ACGT 3 cut(s) 21, 231, 609
MaeIII GTNAC 3 cut(s) 220, 232, 299
MalI GATC 2 cut(s) 266, 358
MboI GATC 2 cut(s) 264, 356
MboII GAAGA 3 cut(s) 41, 48, 340
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 2 cut(s) 148, 174
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 9 cut(s) 103, 106, 170, 356, 398, 425, 526, 562, 622
MseI TTAA 2 cut(s) 44, 513
MslI CAYNNNNRTG 1 cut(s) 100
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 60, 202
MvaI CCWGG 1 cut(s) 60
NciI CCSGG 1 cut(s) 202
NdeII GATC 2 cut(s) 264, 356
NlaIII CATG 2 cut(s) 169, 334
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 2 cut(s) 220, 299
OliI CACNNNNGTG 1 cut(s) 100
PkrI GCNGC 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 428
PstI CTGCAG 1 cut(s) 639
RsaI GTAC 2 cut(s) 434, 582
RsaNI GTAC 2 cut(s) 433, 581
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 44, 513
SatI GCNGC 1 cut(s) 635
Sau3AI GATC 2 cut(s) 264, 356
ScrFI CCNGG 2 cut(s) 60, 202
SduI GDGCHC 1 cut(s) 478
SetI ASST 8 cut(s) 24, 117, 234, 248, 400, 510, 612, 636
SfcI CTRYAG 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 148, 174
SspI AATATT 1 cut(s) 544
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 58, 200
TaiI ACGT 3 cut(s) 24, 234, 612
TaqII GACCGA 1 cut(s) 48
TasI AATT 2 cut(s) 148, 174
TatI WGTACW 2 cut(s) 432, 580
Tru1I TTAA 2 cut(s) 44, 513
Tru9I TTAA 2 cut(s) 44, 513
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 220, 299
TseI GCWGC 1 cut(s) 634
Tsp45I GTSAC 2 cut(s) 220, 299
TspDTI ATGAA 3 cut(s) 17, 319, 630
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 1 cut(s) 88
XapI RAATTY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.