Rorug02G0186300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000247
Physical Location & Seq
Forward (+)
17359279 .. 17363983
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0186300.1

Sequence Viewer

Length: 1935 bp
ATGGCCGAGGAGGCATCACCGACTCGCCTCACCTTCATCCTCATTGTTCTCGTGATCTTCATTATCGATTCCGTCCATGTCTTTGCCAATCCGAGCACCCCTGCTCTTCTTCTCCATTCACTTCCAGTCCCGGCCATGGTGTTACCTCTCTACCACTCCACTCCCAATTCCTCTTCTTCTTCTTCGACGTTTAATTCGCGTCGCCACCTTCAGGGATCCGAGTCCCCTCGCCGCCCCAACGCCAGGATGAGCCTCTACGACGATCTCCTCCGCAACGGGTACTATACGACCCGGCTTTGGATCGGAACGCCGCCGCAGATGTTTGCTCTGATTGTTGATACCGGCAGCACTGTCACCTATGTGCCTTGCTCCTCTTGTGAACAGTGTGGCAGACACCAGGACCCTAAGTTTGATCCCGAATCGTCGAACACGTACCAAGCTGTGAAATGCAACATAGATTGTTCCTGTGACAATGACAGGGTGAATTGTATATACGAGAGGCAGTATGCCGAAATGAGCAGTAGTAGTGGTGTGTTGGGCGAGGATCTTATATCATTTGGGAACCGGAGTGATCTCAAGCCTCAGAGAGCGGTTTTCGGGTGTGAGAATGTGGAGACCGGTGACCTGTTCAGCCAGGCTGCCGATGGGATAATGGGATTGGGACGTGGTGATCTAAGTGTGGTGGATCAGCTTGTTGGGAAAGGTGTTATAAGTGATTCGTTCTCCTTGTGTTATGGTGGGATGGACATTGGCGGGGGTGCAATGGTTCTTGGTGGTATCGCAGCTCCTGAAGACATGGTCTTTACGCAATCAAACGCCGGACGAAGTCCATACTACAATATTGATTTGAAGGAGATACATGTAGCTGGGAAGCAATTGGCTCTGAATCCAAGCGTCTTTGATGGAAAACATGGAACAGTCCTGGACAGTGGCACAACATACGCTTACCTTCCAGAAGCAGCATTTCTAGCATTTAAAGAGGCTATCATGAAGGAAGTTAATTCACTCCAACAGATCCGTGGCCCTGATCCCAACTATAATGATATCTGTTTTTCCACTGATGTAAGTGATGTGTCCCAACTTTCAAGCACCTTTCCACAAGTTGATATGATATTTGGCAATGGGAAAAAGTTTGGCCTATCTCCTGAAAATTACTTATTCCGACATTCAAAGGTGCATGGTGCTTATTGTCTTGGGATTTTCCAAAATGGAAAGGATCCAACTACACTTTTGGGAGGAATCCTTGTCCGCAATACTCTTGTAACATACGACCGTGAGCATTCCAAGATTGGTTTTTGGAAAACTAATTGTTCTGAGTTGTGGGAAAGACTTCATGTATCTCCTTCACCTCTACCAATGCCTCCTACTTCTGAGGAAAAGAATCCAACTGCCGAAACACAGCCTACAGTAGCTCCATCTGGATCGCCATATGTACTTTCAGGAGACCTCCAAATTGGACACATAACATTTGATATGTCTTTGAACATCAGCTACTCAGATCTGAAGCCCCACATTACAGAACTTGGTGAATTCATAGCTCAGGAATTAGACATTAACACTTCACAGGTCAATTTGGTGAAATTTTCTTTTGGTGGAAATCATTCCTTTATTAAATGGGACATAACCCCCGCAGATTCAACCGACTACATTTCTAATACAACAGCTGTGGCTATAATTTCCAGGCTTGCTGAACATCGGTTGCAGTTTCCTGTCATGTTTGGAAGTTATCAGTTGATTGATTGGAGGGTTGAGCCCAAGGCAAAACGGACGTGGTGGAAGAAGAGTCATGTGGTGGTTATATCAATTTTAGTCGTTCTTGTTATTGGATTATTAGTTTCTGGATTGTGGCTTTTTTGGAGACATCGACAACGGACCGTCAATCCATACAAGCCTGTGGATGCGACTGTTACAGAGGCAGAACTCCAGCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

644

Amino Acids

71.07

Weight (kDa)

5.59

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 95 - 259 4.1e-35 Xylanase inhibitor N-terminal
Asp PF00026 95 - 432 4.2e-34 Eukaryotic aspartyl protease
TAXi_C PF14541 279 - 432 1.8e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 590
AccII CGCG 1 cut(s) 199
AciI CCGC 8 cut(s) 232, 271, 311, 314, 590, 753, 1249, 1629
AcoI YGGCCR 2 cut(s) 3, 132
AcsI RAATTY 2 cut(s) 1529, 1580
AcuI CTGAAG 3 cut(s) 194, 810, 1523
AfaI GTAC 3 cut(s) 281, 434, 1434
AfiI CCNNNNNNNGG 4 cut(s) 136, 211, 243, 297
AflIII ACRYGT 2 cut(s) 429, 859
AgeI ACCGGT 1 cut(s) 617
AgsI TTSAA 5 cut(s) 850, 1086, 1170, 1483, 1638
AjiI CACGTC 2 cut(s) 665, 1770
AjnI CCWGG 5 cut(s) 242, 396, 633, 921, 1679
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 8 cut(s) 440, 691, 785, 866, 1412, 1491, 1538, 1664
AluI AGCT 8 cut(s) 440, 691, 785, 866, 1412, 1491, 1538, 1664
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 3 cut(s) 608, 1437, 1852
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 4 cut(s) 3, 132, 1021, 1135
ApeKI GCWGC 4 cut(s) 345, 638, 782, 959
ApoI RAATTY 2 cut(s) 1529, 1580
ArsI GACNNNNNNTTYG 4 cut(s) 178, 210, 392, 424
AsiGI ACCGGT 1 cut(s) 617
Asp700I GAANNNNTTC 2 cut(s) 1329, 1600
AspS9I GGNCC 3 cut(s) 400, 1022, 1872
AsuC2I CCSGG 2 cut(s) 131, 292
AsuHPI GGTGA 9 cut(s) 9, 22, 346, 493, 632, 680, 1338, 1538, 1588
AvaII GGWCC 2 cut(s) 400, 1872
BamHI GGATCC 2 cut(s) 215, 1216
BanII GRGCYC 1 cut(s) 1755
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 4 cut(s) 357, 625, 794, 971
BccI CCATC 4 cut(s) 638, 736, 896, 1423
BciT130I CCWGG 5 cut(s) 244, 398, 635, 923, 1681
BcnI CCSGG 2 cut(s) 131, 292
BcoDI GTCTC 3 cut(s) 608, 1437, 1852
BfaI CTAG 1 cut(s) 968
BfmI CTRYAG 1 cut(s) 1404
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 1 cut(s) 1498
BisI GCNGC 7 cut(s) 232, 311, 314, 346, 639, 783, 960
BlsI GCNGC 7 cut(s) 233, 312, 315, 347, 640, 784, 961
Bme1390I CCNGG 7 cut(s) 131, 244, 292, 398, 635, 923, 1681
Bme18I GGWCC 2 cut(s) 400, 1872
BmgBI CACGTC 2 cut(s) 665, 1770
BmgT120I GGNCC 3 cut(s) 400, 1022, 1872
BmiI GGNNCC 4 cut(s) 217, 402, 563, 1218
BmrFI CCNGG 7 cut(s) 131, 244, 292, 398, 635, 923, 1681
BmsI GCATC 2 cut(s) 23, 1888
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 1 cut(s) 1907
Bpu10I CCTNAGC 1 cut(s) 1539
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 131, 292
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 432
BsaI GGTCTC 2 cut(s) 608, 1437
BsaJI CCNNGG 4 cut(s) 6, 135, 1018, 1755
BsaWI WCCGGW 2 cut(s) 564, 617
BsaXI ACNNNNNCTCC 2 cut(s) 1396, 1426
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 211, 243, 297
Bse118I RCCGGY 2 cut(s) 341, 617
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 768, 1126
BseBI CCWGG 5 cut(s) 244, 398, 635, 923, 1681
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 4 cut(s) 6, 135, 1018, 1755
BseGI GGATG 4 cut(s) 36, 252, 747, 1903
BseLI CCNNNNNNNGG 4 cut(s) 136, 211, 243, 297
BseMI GCAATG 2 cut(s) 768, 1126
BseMII CTCAG 5 cut(s) 596, 1305, 1362, 1509, 1553
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 3 cut(s) 23, 257, 361
BseXI GCAGC 4 cut(s) 357, 625, 794, 971
BseYI CCCAGC 1 cut(s) 866
Bsh1236I CGCG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 1273
BshFI GGCC 4 cut(s) 5, 134, 1023, 1137
BshTI ACCGGT 1 cut(s) 617
BshVI ATCGAT 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 1273
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 6 cut(s) 131, 292, 342, 565, 618, 819
BslFI GGGAC 5 cut(s) 113, 208, 675, 1060, 1631
BslI CCNNNNNNNGG 4 cut(s) 136, 211, 243, 297
BsmAI GTCTC 3 cut(s) 608, 1437, 1852
BsmFI GGGAC 5 cut(s) 113, 208, 675, 1060, 1631
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 4 cut(s) 5, 134, 1023, 1137
Bso31I GGTCTC 2 cut(s) 608, 1437
Bsp1286I GDGCHC 2 cut(s) 98, 1755
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 8 cut(s) 232, 271, 311, 314, 590, 753, 1249, 1629
BspANI GGCC 4 cut(s) 5, 134, 1023, 1137
BspCNI CTCAG 5 cut(s) 595, 1306, 1363, 1508, 1552
BspDI ATCGAT 1 cut(s) 66
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 4 cut(s) 217, 402, 563, 1218
BspQI GCTCTTC 1 cut(s) 111
BspTNI GGTCTC 2 cut(s) 608, 1437
BsrBI CCGCTC 1 cut(s) 590
BsrDI GCAATG 2 cut(s) 768, 1126
BsrFI RCCGGY 2 cut(s) 341, 617
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 2 cut(s) 341, 617
BssECI CCNNGG 4 cut(s) 6, 135, 1018, 1755
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 135, 1755
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 5 cut(s) 244, 398, 635, 923, 1681
Bst4CI ACNGT 8 cut(s) 352, 384, 919, 929, 1274, 1408, 1876, 1906
Bst6I CTCTTC 3 cut(s) 111, 178, 1775
BstBAI YACGTR 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 1686
BstDEI CTNAG 7 cut(s) 405, 582, 674, 1314, 1371, 1495, 1539
BstDSI CCRYGG 2 cut(s) 135, 1018
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 4 cut(s) 36, 252, 747, 1903
BstFNI CGCG 1 cut(s) 199
BstMAI GTCTC 3 cut(s) 608, 1437, 1852
BstMCI CGRYCG 1 cut(s) 1273
BstMWI GCNNNNNNNGC 2 cut(s) 11, 968
BstNI CCWGG 5 cut(s) 244, 398, 635, 923, 1681
BstNSI RCATGY 1 cut(s) 863
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 7 cut(s) 129, 242, 290, 396, 633, 921, 1679
BstSFI CTRYAG 1 cut(s) 1404
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 4 cut(s) 357, 625, 794, 971
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 5 cut(s) 215, 544, 1014, 1216, 1498
BstYI RGATCY 5 cut(s) 215, 544, 1014, 1216, 1498
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 4 cut(s) 5, 134, 1023, 1137
BsuTUI ATCGAT 1 cut(s) 66
BtgI CCRYGG 2 cut(s) 135, 1018
BtrI CACGTC 2 cut(s) 665, 1770
BtsCI GGATG 4 cut(s) 36, 252, 747, 1903
BtsIMutI CAGTG 4 cut(s) 348, 389, 934, 1056
Cac8I GCNNGC 1 cut(s) 1686
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 987
Cfr10I RCCGGY 2 cut(s) 341, 617
Cfr13I GGNCC 3 cut(s) 400, 1022, 1872
ClaI ATCGAT 1 cut(s) 66
CpoI CGGWCCG 1 cut(s) 1872
CseI GACGC 2 cut(s) 188, 883
Csp6I GTAC 3 cut(s) 280, 433, 1433
CspAI ACCGGT 1 cut(s) 617
CspCI CAANNNNNGTGG 2 cut(s) 1647, 1682
CspI CGGWCCG 1 cut(s) 1872
CviQI GTAC 3 cut(s) 280, 433, 1433
DdeI CTNAG 7 cut(s) 405, 582, 674, 1314, 1371, 1495, 1539
DraI TTTAAA 1 cut(s) 976
EaeI YGGCCR 2 cut(s) 3, 132
Eam1104I CTCTTC 3 cut(s) 111, 178, 1775
EarI CTCTTC 3 cut(s) 111, 178, 1775
Eco130I CCWWGG 2 cut(s) 135, 1755
Eco24I GRGCYC 1 cut(s) 1755
Eco31I GGTCTC 2 cut(s) 608, 1437
Eco32I GATATC 1 cut(s) 1045
Eco47I GGWCC 2 cut(s) 400, 1872
Eco57I CTGAAG 3 cut(s) 194, 810, 1523
Eco91I GGTNACC 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 1529
EcoRII CCWGG 5 cut(s) 242, 396, 633, 921, 1679
EcoRV GATATC 1 cut(s) 1045
EcoT14I CCWWGG 2 cut(s) 135, 1755
EcoT38I GRGCYC 1 cut(s) 1755
ErhI CCWWGG 2 cut(s) 135, 1755
FaqI GGGAC 5 cut(s) 113, 208, 675, 1060, 1631
FauI CCCGC 2 cut(s) 746, 1636
FauNDI CATATG 1 cut(s) 1429
Fnu4HI GCNGC 7 cut(s) 232, 311, 314, 346, 639, 783, 960
FokI GGATG 4 cut(s) 23, 259, 754, 1910
FriOI GRGCYC 1 cut(s) 1755
Fsp4HI GCNGC 7 cut(s) 232, 311, 314, 346, 639, 783, 960
FspBI CTAG 1 cut(s) 968
GluI GCNGC 7 cut(s) 232, 311, 314, 346, 639, 783, 960
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 1907
HaeIII GGCC 4 cut(s) 5, 134, 1023, 1137
HapII CCGG 6 cut(s) 131, 292, 342, 565, 618, 819
HgaI GACGC 2 cut(s) 188, 883
HpaII CCGG 6 cut(s) 131, 292, 342, 565, 618, 819
HphI GGTGA 9 cut(s) 9, 22, 346, 493, 632, 680, 1338, 1538, 1588
Hpy166II GTNNAC 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 4 cut(s) 190, 204, 263, 427
HpyAV CCTTC 6 cut(s) 43, 218, 844, 959, 985, 1353
HpyCH4III ACNGT 8 cut(s) 352, 384, 919, 929, 1274, 1408, 1876, 1906
HpyCH4IV ACGT 4 cut(s) 188, 431, 664, 1769
HpyCH4V TGCA 4 cut(s) 450, 761, 1177, 1702
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 968
HpyF3I CTNAG 7 cut(s) 405, 582, 674, 1314, 1371, 1495, 1539
HpySE526I ACGT 4 cut(s) 188, 431, 664, 1769
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 374, 790, 1417
Lsp1109I GCAGC 4 cut(s) 357, 625, 794, 971
LweI GCATC 2 cut(s) 23, 1888
MaeI CTAG 1 cut(s) 968
MaeII ACGT 4 cut(s) 188, 431, 664, 1769
MaeIII GTNAC 6 cut(s) 141, 352, 467, 620, 1261, 1906
MbiI CCGCTC 1 cut(s) 590
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 5 cut(s) 215, 544, 1014, 1216, 1498
MhlI GDGCHC 2 cut(s) 98, 1755
MlyI GAGTC 3 cut(s) 16, 230, 1792
MmeI TCCRAC 4 cut(s) 1033, 1186, 1244, 1409
MroXI GAANNNNTTC 2 cut(s) 1329, 1600
MseI TTAA 5 cut(s) 192, 975, 999, 1554, 1611
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 1664
MspI CCGG 6 cut(s) 131, 292, 342, 565, 618, 819
MspR9I CCNGG 7 cut(s) 131, 244, 292, 398, 635, 923, 1681
MunI CAATTG 1 cut(s) 875
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 5 cut(s) 244, 398, 635, 923, 1681
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 11, 968
NciI CCSGG 2 cut(s) 131, 292
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 1429
NlaIV GGNNCC 4 cut(s) 217, 402, 563, 1218
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 352, 467, 620
NspI RCATGY 1 cut(s) 863
OliI CACNNNNGTG 1 cut(s) 359
PagI TCATGA 1 cut(s) 987
PciI ACATGT 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 2 cut(s) 1329, 1600
PfeI GAWTC 7 cut(s) 68, 419, 716, 886, 1239, 1381, 1634
PflFI GACNNNGTC 2 cut(s) 797, 825
PfoI TCCNGGA 1 cut(s) 921
PinAI ACCGGT 1 cut(s) 617
PkrI GCNGC 7 cut(s) 233, 312, 315, 347, 640, 784, 961
PleI GAGTC 3 cut(s) 16, 229, 1791
PpsI GAGTC 3 cut(s) 16, 229, 1791
Ppu21I YACGTR 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 400
PscI ACATGT 1 cut(s) 859
PsiI TTATAA 1 cut(s) 710
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 5 cut(s) 242, 396, 633, 921, 1679
PspEI GGTNACC 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 5 cut(s) 242, 396, 633, 921, 1679
PspN4I GGNNCC 4 cut(s) 217, 402, 563, 1218
PspPI GGNCC 3 cut(s) 400, 1022, 1872
PspPPI RGGWCCY 1 cut(s) 400
PsrI GAACNNNNNNTAC 2 cut(s) 1475, 1507
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 5 cut(s) 215, 544, 1014, 1216, 1498
PsyI GACNNNGTC 2 cut(s) 797, 825
PvuII CAGCTG 1 cut(s) 1664
RsaI GTAC 3 cut(s) 281, 434, 1434
RsaNI GTAC 3 cut(s) 280, 433, 1433
RseI CAYNNNNRTG 1 cut(s) 359
Rsr2I CGGWCCG 1 cut(s) 1872
RsrII CGGWCCG 1 cut(s) 1872
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 5 cut(s) 192, 975, 999, 1554, 1611
SatI GCNGC 7 cut(s) 232, 311, 314, 346, 639, 783, 960
Sau96I GGNCC 3 cut(s) 400, 1022, 1872
SchI GAGTC 3 cut(s) 16, 230, 1792
ScrFI CCNGG 7 cut(s) 131, 244, 292, 398, 635, 923, 1681
SduI GDGCHC 2 cut(s) 98, 1755
SfaNI GCATC 2 cut(s) 23, 1888
SfcI CTRYAG 1 cut(s) 1404
SinI GGWCC 2 cut(s) 400, 1872
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SsiI CCGC 8 cut(s) 232, 271, 311, 314, 590, 753, 1249, 1629
SspI AATATT 1 cut(s) 841
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 7 cut(s) 129, 242, 290, 396, 633, 921, 1679
StyI CCWWGG 2 cut(s) 135, 1755
TaaI ACNGT 8 cut(s) 352, 384, 919, 929, 1274, 1408, 1876, 1906
TaiI ACGT 4 cut(s) 191, 434, 667, 1772
TaqI TCGA 4 cut(s) 66, 185, 425, 1864
TatI WGTACW 1 cut(s) 1432
TauI GCSGC 3 cut(s) 234, 313, 316
TfiI GAWTC 7 cut(s) 68, 419, 716, 886, 1239, 1381, 1634
Tru1I TTAA 5 cut(s) 192, 975, 999, 1554, 1611
Tru9I TTAA 5 cut(s) 192, 975, 999, 1554, 1611
TscAI CASTG 4 cut(s) 355, 389, 934, 1063
TseFI GTSAC 3 cut(s) 352, 467, 620
TseI GCWGC 4 cut(s) 345, 638, 782, 959
Tsp45I GTSAC 3 cut(s) 352, 467, 620
TspDTI ATGAA 5 cut(s) 25, 49, 1004, 1322, 1522
TspGWI ACGGA 4 cut(s) 61, 1007, 1780, 1885
TspRI CASTG 4 cut(s) 355, 389, 934, 1063
Tth111I GACNNNGTC 2 cut(s) 797, 825
VpaK11BI GGWCC 2 cut(s) 400, 1872
XapI RAATTY 2 cut(s) 1529, 1580
XceI RCATGY 1 cut(s) 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 1016
XmnI GAANNNNTTC 2 cut(s) 1329, 1600
XspI CTAG 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.