Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

27317811 .. 27318406

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATATTGCTGGCACTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTAGGCGTCTACCTCCAACTCAAGTTTCCGAATGTGTCTACATATGCGACCGCCTACGGCACTGTGATGATGGACCTCATCATTATTGAGACATGCTTTTACATCGTCTCTTTAGTTGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTTCGAAGATCTGATGAACAATATTAGCCTCTTACTTGGAATATTAGCCTCTTACTTGGAATCTTGCCGGTCTCTGAACACACTCTACCAAAGTGCAGTTGCACATCTTGTTCATGACATTGGAGAAGTGAAACAGAAGCTGGTTGATCTGAATCGCCGCTTGATGGACAGTAACGCAATTGCAGCACTTCATGGTCCCTATCAGACATTGAAGGACCTGATCATCAGGAATGACGGGCGCATGACAGAGCATGAAGCCCAGAACCATAGCAGTGAGGAACCTGTTTCAATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

165

Amino Acids

18.4

Weight (kDa)

5.38

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	57, 86
AciI	CCGC	2 cut(s)	99, 358
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	412, 489
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	2 cut(s)	182, 340
AluI	AGCT	2 cut(s)	182, 340
Alw26I	GTCTC	3 cut(s)	131, 160, 276
AlwNI	CAGNNNCTG	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	182, 383
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	121, 395, 415
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	3 cut(s)	121, 395, 415
BbvI	GCAGC	2 cut(s)	169, 395
BccI	CCATC	3 cut(s)	112, 163, 358
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	131, 160, 276
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	183, 358, 384
BlsI	GCNGC	3 cut(s)	184, 359, 385
Bme18I	GGWCC	3 cut(s)	121, 395, 415
BmgT120I	GGNCC	3 cut(s)	121, 395, 415
BmiI	GGNNCC	2 cut(s)	397, 480
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	2 cut(s)	173, 351
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	267
Bse8I	GATNNNNATC	2 cut(s)	173, 351
BseJI	GATNNNNATC	2 cut(s)	173, 351
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	169, 395
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	3 cut(s)	131, 160, 276
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	208, 346, 420
BspACI	CCGC	2 cut(s)	99, 358
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	397, 480
BspT104I	TTCGAA	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssMI	GATC	3 cut(s)	208, 346, 420
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	112, 371
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	12, 21, 187
BstDEI	CTNAG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	3 cut(s)	211, 349, 423
BstMAI	GTCTC	3 cut(s)	131, 160, 276
BstMBI	GATC	3 cut(s)	208, 346, 420
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 20, 383
BstNSI	RCATGY	2 cut(s)	23, 144
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	169, 395
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	14, 478
BtsIMutI	CAGTG	3 cut(s)	14, 108, 478
Cac8I	GCNNGC	3 cut(s)	12, 21, 187
CaiI	CAGNNNCTG	1 cut(s)	340
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	121, 395, 415
CseI	GACGC	1 cut(s)	43
CviAII	CATG	7 cut(s)	20, 28, 141, 314, 392, 442, 452
CviJI	RGCY	5 cut(s)	182, 228, 248, 340, 458
CviKI_1	RGCY	5 cut(s)	182, 228, 248, 340, 458
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	3 cut(s)	210, 348, 422
DpnII	GATC	3 cut(s)	208, 346, 420
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	3 cut(s)	121, 395, 415
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	7 cut(s)	23, 31, 144, 317, 395, 445, 455
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	7 cut(s)	19, 27, 140, 313, 391, 441, 451
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	2 cut(s)	57, 86
Fnu4HI	GCNGC	3 cut(s)	183, 358, 384
Fsp4HI	GCNGC	3 cut(s)	183, 358, 384
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	3 cut(s)	183, 358, 384
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	7 cut(s)	23, 31, 144, 317, 395, 445, 455
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	45, 174, 260, 352
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	58, 87
Hpy188I	TCNGA	6 cut(s)	44, 78, 213, 276, 351, 405
Hpy188III	TCNNGA	2 cut(s)	314, 427
Hpy8I	GTNNAC	2 cut(s)	58, 87
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	112, 371
HpyCH4V	TGCA	5 cut(s)	19, 23, 296, 302, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 20, 383
HpyF3I	CTNAG	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	7 cut(s)	23, 31, 144, 317, 395, 445, 455
HspAI	GCGC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	208, 346, 420
LpnPI	CCDG	5 cut(s)	281, 326, 412, 431, 473
Lsp1109I	GCAGC	2 cut(s)	169, 395
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	210, 348, 422
MboI	GATC	3 cut(s)	208, 346, 420
MboII	GAAGA	1 cut(s)	218
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	378, 489
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	71, 134, 239, 259, 469
Mph1103I	ATGCAT	1 cut(s)	25
MslI	CAYNNNNRTG	2 cut(s)	113, 471
MspI	CCGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	16, 20, 383
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	3 cut(s)	208, 346, 420
NlaIII	CATG	7 cut(s)	23, 31, 144, 317, 395, 445, 455
NlaIV	GGNNCC	2 cut(s)	397, 480
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	23, 144
NspV	TTCGAA	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	313
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	174, 260, 352
PkrI	GCNGC	3 cut(s)	184, 359, 385
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	397, 480
PspPI	GGNCC	3 cut(s)	121, 395, 415
PspPPI	RGGWCCY	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	113, 471
SatI	GCNGC	3 cut(s)	183, 358, 384
Sau3AI	GATC	3 cut(s)	208, 346, 420
Sau96I	GGNCC	3 cut(s)	121, 395, 415
SchI	GAGTC	1 cut(s)	54
SetI	ASST	6 cut(s)	63, 126, 184, 342, 420, 484
SfcI	CTRYAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	3 cut(s)	121, 395, 415
SmiMI	CAYNNNNRTG	2 cut(s)	113, 471
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	378, 489
SsiI	CCGC	2 cut(s)	99, 358
SspI	AATATT	2 cut(s)	223, 243
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	112, 371
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	378, 489
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	174, 260, 352
TscAI	CASTG	3 cut(s)	21, 115, 478
TseI	GCWGC	2 cut(s)	182, 383
TspDTI	ATGAA	5 cut(s)	16, 230, 302, 380, 468
TspRI	CASTG	3 cut(s)	21, 115, 478
VpaK11BI	GGWCC	3 cut(s)	121, 395, 415
XceI	RCATGY	2 cut(s)	23, 144
XmiI	GTMKAC	2 cut(s)	57, 86
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.