RLG00000021656

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000247
Physical Location & Seq
Reverse (-)
77036467 .. 77037288
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021656

Sequence Viewer

Length: 585 bp
ATGTCGTACATCTTAAACGCCTCCCTCAAATCATTTCTGTCCATCGACATCAAAAAATGCGGTTCCAGTCCAGCGACGAATGGTGCGTTTTGGGTTCGAGAAGAACAGGGCGTTCAGGTCGGCTTACAGAGGTACAGAGTTATAGAGTTACAATTCTCCGTCGATATGAGTAGATGCAACTCTGGTCTACGGGTCGGGTTACAGTCGGTCGAATTCAACTGGTTGAAAACAATAGGGATTAGCTGCAAGGGAGGGAGCCTCTGGGCGGGCACAAGTCAGCCAGGTCTTTGCTGTTCTGGGGAGGAGGTTCAAAGTTCTAAGGGGGCATTGCACCCATATATTTTCTCTTTAATCGTCATGCTGGGTTTGCTCCTTCAAGTGAAGCAGGCAGCCTGGAGTAAATCTCCATTTGACACAGATCATCTCACTATGCTGACCCTTATTGCTGTTTTCTTGATTTACATCGGGTCACTGGCAATTCTCAAGAAATTGCACCCTCCCAATTCAGATTTGGCTAATCTGAATTTCCGCTCAATATTCGCCTCTGCTGATCCCTTGCTGCAGTCTTACTATTGCTCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.26

Weight (kDa)

8.75

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 187
AciI CCGC 3 cut(s) 60, 266, 529
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 2 cut(s) 212, 523
AfaI GTAC 2 cut(s) 8, 134
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 217, 226, 311, 377
AjnI CCWGG 2 cut(s) 280, 392
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
AlwI GGATC 1 cut(s) 545
ApeKI GCWGC 3 cut(s) 243, 389, 559
ApoI RAATTY 2 cut(s) 212, 523
BaeGI GKGCMC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 230, 401, 546
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 282, 394
BfmI CTRYAG 1 cut(s) 560
BisI GCNGC 3 cut(s) 244, 390, 560
BlsI GCNGC 3 cut(s) 245, 391, 561
Bme1390I CCNGG 2 cut(s) 282, 394
BmiI GGNNCC 2 cut(s) 64, 257
BmrFI CCNGG 2 cut(s) 282, 394
BmsI GCATC 1 cut(s) 164
BplI GAGNNNNNCTC 4 cut(s) 243, 275, 388, 420
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 461
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 3 cut(s) 66, 224, 477
Bse3DI GCAATG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 2 cut(s) 282, 394
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 326
BseNI ACTGG 3 cut(s) 66, 224, 477
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 3 cut(s) 230, 401, 546
BseYI CCCAGC 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 418, 550
BspACI CCGC 3 cut(s) 60, 266, 529
BspLI GGNNCC 2 cut(s) 64, 257
BspMAI CTGCAG 1 cut(s) 564
BspPI GGATC 1 cut(s) 545
BsrBI CCGCTC 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 3 cut(s) 66, 224, 477
BssMI GATC 2 cut(s) 418, 550
Bst2UI CCWGG 2 cut(s) 282, 394
Bst4CI ACNGT 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 268, 387
BstDEI CTNAG 1 cut(s) 318
BstKTI GATC 2 cut(s) 421, 553
BstMBI GATC 2 cut(s) 418, 550
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 2 cut(s) 282, 394
BstSCI CCNGG 2 cut(s) 280, 392
BstSFI CTRYAG 1 cut(s) 560
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 230, 401, 546
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 268, 387
Csp6I GTAC 2 cut(s) 7, 133
CviAII CATG 1 cut(s) 358
CviJI RGCY 6 cut(s) 123, 243, 258, 280, 392, 515
CviKI_1 RGCY 6 cut(s) 123, 243, 258, 280, 392, 515
CviQI GTAC 2 cut(s) 7, 133
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 420, 552
DpnII GATC 2 cut(s) 418, 550
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 280, 392
FaeI CATG 1 cut(s) 361
FaiI YATR 6 cut(s) 143, 167, 337, 339, 359, 431
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 259
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 244, 390, 560
Fsp4HI GCNGC 3 cut(s) 244, 390, 560
GluI GCNGC 3 cut(s) 244, 390, 560
GsaI CCCAGC 1 cut(s) 365
GsuI CTGGAG 1 cut(s) 415
Hin1II CATG 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 508, 522
Hpy188III TCNNGA 3 cut(s) 98, 454, 484
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 2 cut(s) 79, 164
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 177, 246, 331, 493, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 1 cut(s) 361
Kzo9I GATC 2 cut(s) 418, 550
LmnI GCTCC 2 cut(s) 255, 375
Lsp1109I GCAGC 3 cut(s) 230, 401, 546
LweI GCATC 1 cut(s) 164
MaeIII GTNAC 3 cut(s) 147, 198, 468
MalI GATC 2 cut(s) 420, 552
MbiI CCGCTC 1 cut(s) 531
MboI GATC 2 cut(s) 418, 550
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 6 cut(s) 152, 212, 477, 488, 502, 523
MnlI CCTC 9 cut(s) 31, 35, 123, 245, 269, 295, 298, 507, 553
MseI TTAA 3 cut(s) 14, 350, 583
MspR9I CCNGG 2 cut(s) 282, 394
MvaI CCWGG 2 cut(s) 282, 394
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 2 cut(s) 418, 550
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 2 cut(s) 64, 257
NmuCI GTSAC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PkrI GCNGC 3 cut(s) 245, 391, 561
Psp6I CCWGG 2 cut(s) 280, 392
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 2 cut(s) 280, 392
PspN4I GGNNCC 2 cut(s) 64, 257
PstI CTGCAG 1 cut(s) 564
RsaI GTAC 2 cut(s) 8, 134
RsaNI GTAC 2 cut(s) 7, 133
SaqAI TTAA 3 cut(s) 14, 350, 583
SatI GCNGC 3 cut(s) 244, 390, 560
Sau3AI GATC 2 cut(s) 418, 550
ScrFI CCNGG 2 cut(s) 282, 394
SduI GDGCHC 1 cut(s) 272
SetI ASST 5 cut(s) 120, 134, 245, 286, 309
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 6 cut(s) 152, 212, 477, 488, 502, 523
SsiI CCGC 3 cut(s) 60, 266, 529
SspI AATATT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 280, 392
TaaI ACNGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 45, 97, 162, 210
TaqII GACCGA 1 cut(s) 196
TasI AATT 6 cut(s) 152, 212, 477, 488, 502, 523
Tru1I TTAA 3 cut(s) 14, 350, 583
Tru9I TTAA 3 cut(s) 14, 350, 583
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 3 cut(s) 243, 389, 559
Tsp45I GTSAC 1 cut(s) 468
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 477
XapI RAATTY 2 cut(s) 212, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.