pycom111g04940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000247
Physical Location & Seq
Forward (+)
3098626 .. 3099292
667 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04940.2

Sequence Viewer

Length: 537 bp
ATGGACGTCGGAAGATCAGCTAATTCTCCACGAATCTCAGCTTGTAGCACGAGGGAGGATAGTGGTCCCCACAAATGTATTTTCTTTCTCCTCACCATGCTAGGCTTGCTGCTCCAAGTTAAATGTACAGCCGTGCAGGCGTCTCCATTTGATACAAACTATGTCATTATTTTGATGTTAATTGCCGATTTATTTGCTTATGCCGGGACATTGGCCATTGTTAAGATACTGCAAGCTTCCCACAATTCAGATCTGTATGAATTGATGAACACAATCAGCCTTTTGTGTGGAACTTTTGCCTTGATTCTACTAACGTTCATCCTTGATCCAAATTTTGGGTGGTTTGCTTTCACATGCTGGGCCATATGCTTTGTGTCAACTATGGTTAAGTCTTACCCAACATTGAAAAGACTTTGTACAAGTACAACAAATGCAACTTATATACTCTATTATGTCATTTGCAAACTGAAGGAGCTGAACATGAGATTGAATGGCACGGAAGAATCTCAATCTCAAAACCAAATTGGGATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

7.51

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 335
AclI AACGTT 1 cut(s) 314
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 488
AcyI GRCGYC 2 cut(s) 6, 140
AfaI GTAC 3 cut(s) 127, 418, 424
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 406, 490
AluBI AGCT 4 cut(s) 20, 41, 236, 475
AluI AGCT 4 cut(s) 20, 41, 236, 475
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 320
AoxI GGCC 2 cut(s) 213, 360
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 65, 360
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 215
BauI CACGAG 1 cut(s) 49
BbvI GCAGC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 250
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 65, 360
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 205
BsaHI GRCGYC 2 cut(s) 6, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 2 cut(s) 215, 362
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 51, 220
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 51, 220
BsnI GGCC 2 cut(s) 215, 362
Bsp1407I TGTACA 2 cut(s) 125, 416
Bsp143I GATC 3 cut(s) 14, 250, 325
BspANI GGCC 2 cut(s) 215, 362
BspCNI CTCAG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 320
BsrGI TGTACA 2 cut(s) 125, 416
BssMI GATC 3 cut(s) 14, 250, 325
BssNI GRCGYC 2 cut(s) 6, 140
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 6, 140
BstAUI TGTACA 2 cut(s) 125, 416
BstC8I GCNNGC 3 cut(s) 107, 138, 234
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 3 cut(s) 17, 253, 328
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 3 cut(s) 14, 250, 325
BstMWI GCNNNNNNNGC 2 cut(s) 106, 137
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 2 cut(s) 215, 362
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 107, 138, 234
Cfr13I GGNCC 2 cut(s) 65, 360
CseI GACGC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 126, 417, 423
CviAII CATG 3 cut(s) 97, 354, 481
CviJI RGCY 9 cut(s) 20, 41, 105, 131, 215, 236, 279, 362, 475
CviKI_1 RGCY 9 cut(s) 20, 41, 105, 131, 215, 236, 279, 362, 475
CviQI GTAC 3 cut(s) 126, 417, 423
DdeI CTNAG 1 cut(s) 37
DpnI GATC 3 cut(s) 16, 252, 327
DpnII GATC 3 cut(s) 14, 250, 325
EaeI YGGCCR 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 488
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 3 cut(s) 100, 357, 484
FaqI GGGAC 2 cut(s) 51, 220
FatI CATG 3 cut(s) 96, 353, 480
FauNDI CATATG 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 2 cut(s) 215, 362
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 6, 140
Hin1II CATG 3 cut(s) 100, 357, 484
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 3 cut(s) 33, 304, 503
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 11, 250
Hpy8I GTNNAC 1 cut(s) 378
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 463
HpyCH4IV ACGT 2 cut(s) 6, 314
HpyCH4V TGCA 4 cut(s) 136, 232, 434, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 137
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 2 cut(s) 6, 314
Hsp92I GRCGYC 2 cut(s) 6, 140
Hsp92II CATG 3 cut(s) 100, 357, 484
Kzo9I GATC 3 cut(s) 14, 250, 325
LmnI GCTCC 2 cut(s) 117, 472
LpnPI CCDG 3 cut(s) 122, 217, 343
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 6, 314
MalI GATC 3 cut(s) 16, 252, 327
MboI GATC 3 cut(s) 14, 250, 325
MboII GAAGA 2 cut(s) 24, 512
MflI RGATCY 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 6 cut(s) 22, 180, 244, 260, 331, 522
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 3 cut(s) 45, 49, 101
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 5 cut(s) 120, 179, 222, 387, 535
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 106, 137
NciI CCSGG 1 cut(s) 205
NdeI CATATG 1 cut(s) 365
NdeII GATC 3 cut(s) 14, 250, 325
NlaIII CATG 3 cut(s) 100, 357, 484
NlaIV GGNNCC 1 cut(s) 67
NspI RCATGY 1 cut(s) 357
PfeI GAWTC 3 cut(s) 33, 304, 503
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 65, 360
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 3 cut(s) 127, 418, 424
RsaNI GTAC 3 cut(s) 126, 417, 423
SaqAI TTAA 5 cut(s) 120, 179, 222, 387, 535
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 14, 250, 325
Sau96I GGNCC 2 cut(s) 65, 360
ScrFI CCNGG 1 cut(s) 205
SetI ASST 6 cut(s) 9, 22, 43, 238, 317, 477
SinI GGWCC 1 cut(s) 65
Sse9I AATT 6 cut(s) 22, 180, 244, 260, 331, 522
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 203
TaiI ACGT 2 cut(s) 9, 317
TasI AATT 6 cut(s) 22, 180, 244, 260, 331, 522
TatI WGTACW 3 cut(s) 125, 416, 422
TfiI GAWTC 3 cut(s) 33, 304, 503
Tru1I TTAA 5 cut(s) 120, 179, 222, 387, 535
Tru9I TTAA 5 cut(s) 120, 179, 222, 387, 535
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 273, 281, 307
TspGWI ACGGA 1 cut(s) 512
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XspI CTAG 1 cut(s) 101
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.