Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000612.1

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Reverse (-)

7402 .. 7959

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000612.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgttttctctcatcggagtcttaggcgtctgcctccaactcaagtttccagatgtgtctacatatgcgaccgcctacggcaccgtgatgatggacctcatcattattgcgacatgcttttacatcgtctccttagtagtgatgggaatcctagctgctcgcaataatacagattatgaagatctgatgaacaaaatttgcctcttacttggaagtctgtccctgattttagagttgctcatccttatttcaccattcggatggattgcactcttcttctggaccacctaccttttatgcttcgtgagtaagtcttaccaggggctgaaaaaactctaccaaagtgcagtggaacagcttgttccagacattggagaattgaaacagaagttggttgatttgaatcgccgcgtgatgggcagtaatacaattgcggcacttggtcgtgcctatcagacattgaagaacctgatcatcaggaatgaggggcgcatgacagggcatgaagcccagaacacgaaccagaaccagaacagcaccactgaagaaccagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

185

Amino Acids

20.68

Weight (kDa)

6.56

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	411
AciI	CCGC	3 cut(s)	72, 409, 434
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	371, 415
AgsI	TTSAA	3 cut(s)	382, 403, 463
AjnI	CCWGG	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	4 cut(s)	30, 62, 374, 406
AluBI	AGCT	2 cut(s)	155, 358
AluI	AGCT	2 cut(s)	155, 358
Alw26I	GTCTC	1 cut(s)	133
AlwNI	CAGNNNCTG	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	94, 282
AsuHPI	GGTGA	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	94, 282
BanI	GGYRCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	4 cut(s)	85, 136, 255, 409
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	3 cut(s)	156, 409, 435
BlsI	GCNGC	3 cut(s)	157, 410, 436
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	94, 282
BmgT120I	GGNCC	2 cut(s)	94, 282
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	146, 402
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 415
Bse1I	ACTGG	1 cut(s)	551
Bse8I	GATNNNNATC	2 cut(s)	146, 402
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	240, 266
BseJI	GATNNNNATC	2 cut(s)	146, 402
BseLI	CCNNNNNNNGG	2 cut(s)	371, 415
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	371, 415
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	181, 471
BspACI	CCGC	3 cut(s)	72, 409, 434
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	181, 471
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	22, 133
BstF5I	GGATG	2 cut(s)	240, 266
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	2 cut(s)	184, 474
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	181, 471
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	240, 266
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 540
Cac8I	GCNNGC	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	94, 282
CseI	GACGC	1 cut(s)	16
CviAII	CATG	3 cut(s)	114, 493, 503
CviJI	RGCY	4 cut(s)	155, 325, 358, 509
CviKI_1	RGCY	4 cut(s)	155, 325, 358, 509
DdeI	CTNAG	2 cut(s)	22, 133
DpnI	GATC	2 cut(s)	183, 473
DpnII	GATC	2 cut(s)	181, 471
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	94, 282
EcoRII	CCWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	3 cut(s)	117, 496, 506
FaiI	YATR	7 cut(s)	64, 66, 115, 177, 298, 494, 504
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	113, 492, 502
FauNDI	CATATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	471
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	156, 409, 435
FokI	GGATG	2 cut(s)	227, 273
Fsp4HI	GCNGC	3 cut(s)	156, 409, 435
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	3 cut(s)	156, 409, 435
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	117, 496, 506
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	18, 147, 403
HphI	GGTGA	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	17, 186, 260, 456
Hpy188III	TCNNGA	5 cut(s)	50, 280, 304, 365, 478
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	269, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	2 cut(s)	22, 133
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	117, 496, 506
HspAI	GCGC	1 cut(s)	490
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	181, 471
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	152
MalI	GATC	2 cut(s)	183, 473
MboI	GATC	2 cut(s)	181, 471
MboII	GAAGA	5 cut(s)	191, 265, 268, 475, 557
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	3 cut(s)	195, 377, 429
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	44, 107, 212, 478
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	2 cut(s)	86, 259
MspR9I	CCNGG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	2 cut(s)	181, 471
NlaIII	CATG	3 cut(s)	117, 496, 506
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	147, 403
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	157, 410, 436
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	94, 282
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	86, 259
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	3 cut(s)	156, 409, 435
Sau3AI	GATC	2 cut(s)	181, 471
Sau96I	GGNCC	2 cut(s)	94, 282
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	6 cut(s)	99, 157, 290, 294, 360, 471
SinI	GGWCC	2 cut(s)	94, 282
SmiMI	CAYNNNNRTG	2 cut(s)	86, 259
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	195, 377, 429
SsiI	CCGC	3 cut(s)	72, 409, 434
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	3 cut(s)	195, 377, 429
TauI	GCSGC	2 cut(s)	411, 437
TfiI	GAWTC	2 cut(s)	147, 403
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	2 cut(s)	354, 547
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	192, 203, 519
TspRI	CASTG	2 cut(s)	354, 547
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	94, 282
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.