Rroxscaffold_2G00084170

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
6657398 .. 6667755
10358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084170.1

Sequence Viewer

Length: 906 bp
ATGGGGCATGTTGTTGTTGCACTATTGCATGAGGAAGTCACGTCTTTGATGAATGCGTGTTTCAGTTTTGTGACGATTCTTGCCGTATCTATGTCAAATCCCCATATAACCGAAACCGACTCCAGAACAGGATCTACCAACGTAGGGCAGTTTCGTCATTTCGACGCCCAATTGACCAACATGTTTCCCGTTGAGTGTTCAAATCACCCAACATCTTTCATTTCTTCGTCATTTCTCCGACGTGAAAGGGATCAGGGTGCAGTTCTCAACAGTACCACAGGGGCATTACACGGTTGCATTGTTTCTCTCATCACCATCTTGGGATTTTGCCTCCCACTCAAGTTTGCAAATGCTTCACCATTTGAGACAAACTACGACAGTATGCTGATGACTCTGTTTATTATGGACTCAGTCATTTACTTTGGGAGTTTAGCTTTCATGATAATCCAAGTCGCCCGCAACAATGCAGATATCGGAGAGTTCATGAACAAGATTAGCCTCTTGTTTGGAAGTCTTGCCTTTGTTTTAGAATTGCTCATCCTTGTTCAACCTTTTGGATGGATCGTGCTCTTCATCTGGAGCATTTGTTTTCTGAGGGTTGTGACTAACTCGTACCAATTGTTGAAAACACTCTATGGAAGTGCAATTGCAGGTCTTCATCATCGCTCCCGCGAATTGAAACAGAAATTGATTGAACTGGGTGACCACTCGATTCTAAGTAATGCATTTCTAGCACTTGCTCGTTTGCTCCCTCGGGCTCAGGGCAGTTCTATTGGGGCATTTAACAAGGGCATCGTCTCTGTCATCACCATCTTGGCCGTGTTCTTCAAACAAGCACCCGTAGAAAATACATCTCCAACTGTCACCGACTACAGGTCCTATACTCATCCCGAAATCCGGAATTAG

Protein Analysis

301

Amino Acids

33.35

Weight (kDa)

7.15

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AccII CGCG 1 cut(s) 672
AccIII TCCGGA 1 cut(s) 897
AciI CCGC 2 cut(s) 457, 670
AclWI GGATC 3 cut(s) 139, 258, 569
AcoI YGGCCR 1 cut(s) 816
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 274, 614
AfiI CCNNNNNNNGG 3 cut(s) 144, 873, 897
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 201, 548, 625, 679, 695, 829
AhdI GACNNNNNGTC 1 cut(s) 874
AjiI CACGTC 2 cut(s) 42, 242
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 2 cut(s) 359, 802
AlwI GGATC 3 cut(s) 139, 258, 569
Ama87I CYCGRG 1 cut(s) 753
Aor13HI TCCGGA 1 cut(s) 897
AoxI GGCC 1 cut(s) 816
AspS9I GGNCC 1 cut(s) 876
AsuHPI GGTGA 6 cut(s) 197, 304, 348, 713, 799, 856
AvaI CYCGRG 1 cut(s) 753
AvaII GGWCC 1 cut(s) 876
BanII GRGCYC 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 570
BccI CCATC 3 cut(s) 323, 552, 818
BceAI ACGGC 2 cut(s) 68, 803
BcoDI GTCTC 2 cut(s) 359, 802
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 871
BfuAI ACCTGC 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 876
BmeRI GACNNNNNGTC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 753
BmgBI CACGTC 2 cut(s) 42, 242
BmgT120I GGNCC 1 cut(s) 876
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 1 cut(s) 801
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 2 cut(s) 106, 598
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 752
BsaWI WCCGGW 1 cut(s) 897
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 873, 897
Bse1I ACTGG 1 cut(s) 702
BseAI TCCGGA 1 cut(s) 897
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 3 cut(s) 537, 563, 886
BseLI CCNNNNNNNGG 3 cut(s) 144, 873, 897
BseMII CTCAG 3 cut(s) 423, 584, 773
BseNI ACTGG 1 cut(s) 702
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 753
BsiSI CCGG 1 cut(s) 898
BslI CCNNNNNNNGG 3 cut(s) 144, 873, 897
BsmAI GTCTC 2 cut(s) 359, 802
BsmBI CGTCTC 1 cut(s) 802
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 1 cut(s) 818
BsoBI CYCGRG 1 cut(s) 753
Bsp1286I GDGCHC 2 cut(s) 570, 760
Bsp13I TCCGGA 1 cut(s) 897
Bsp143I GATC 3 cut(s) 131, 250, 561
BspACI CCGC 2 cut(s) 457, 670
BspANI GGCC 1 cut(s) 818
BspCNI CTCAG 3 cut(s) 422, 585, 772
BspEI TCCGGA 1 cut(s) 897
BspFNI CGCG 1 cut(s) 672
BspHI TCATGA 2 cut(s) 438, 483
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 3 cut(s) 139, 258, 569
BspQI GCTCTTC 1 cut(s) 575
BsrI ACTGG 1 cut(s) 702
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 3 cut(s) 131, 250, 561
BssNI GRCGYC 1 cut(s) 165
Bst4CI ACNGT 4 cut(s) 272, 293, 380, 862
Bst6I CTCTTC 1 cut(s) 575
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 4 cut(s) 409, 593, 716, 759
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 3 cut(s) 537, 563, 886
BstFNI CGCG 1 cut(s) 672
BstKTI GATC 3 cut(s) 134, 253, 564
BstMAI GTCTC 2 cut(s) 359, 802
BstMBI GATC 3 cut(s) 131, 250, 561
BstMWI GCNNNNNNNGC 1 cut(s) 731
BstNSI RCATGY 2 cut(s) 11, 184
BstPI GGTNACC 1 cut(s) 701
BstSFI CTRYAG 1 cut(s) 871
BstUI CGCG 1 cut(s) 672
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 818
BtgZI GCGATG 1 cut(s) 647
BtrI CACGTC 2 cut(s) 42, 242
BtsCI GGATG 3 cut(s) 537, 563, 886
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 457
CciI TCATGA 2 cut(s) 438, 483
Cfr13I GGNCC 1 cut(s) 876
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 273, 613
CviAII CATG 5 cut(s) 8, 29, 181, 439, 484
CviJI RGCY 4 cut(s) 434, 498, 758, 818
CviKI_1 RGCY 4 cut(s) 434, 498, 758, 818
CviQI GTAC 2 cut(s) 273, 613
DdeI CTNAG 4 cut(s) 409, 593, 716, 759
DpnI GATC 3 cut(s) 133, 252, 563
DpnII GATC 3 cut(s) 131, 250, 561
DriI GACNNNNNGTC 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 575
Eam1105I GACNNNNNGTC 1 cut(s) 874
EarI CTCTTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 760
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 876
EcoO65I GGTNACC 1 cut(s) 701
EcoRV GATATC 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 802
FaeI CATG 5 cut(s) 11, 32, 184, 442, 487
FatI CATG 5 cut(s) 7, 28, 180, 438, 483
FauI CCCGC 2 cut(s) 464, 677
FokI GGATG 3 cut(s) 524, 570, 873
FriOI GRGCYC 1 cut(s) 760
FspBI CTAG 1 cut(s) 731
GsuI CTGGAG 2 cut(s) 106, 598
HaeIII GGCC 1 cut(s) 818
HapII CCGG 1 cut(s) 898
HgaI GACGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 5 cut(s) 11, 32, 184, 442, 487
HinfI GANTC 5 cut(s) 76, 119, 391, 407, 712
HpaII CCGG 1 cut(s) 898
HphI GGTGA 6 cut(s) 197, 304, 348, 713, 799, 856
Hpy188I TCNGA 3 cut(s) 239, 476, 594
Hpy188III TCNNGA 6 cut(s) 123, 439, 484, 577, 890, 898
Hpy99I CGWCG 2 cut(s) 167, 243
HpyCH4III ACNGT 4 cut(s) 272, 293, 380, 862
HpyCH4IV ACGT 3 cut(s) 41, 141, 241
HpyCH4V TGCA 9 cut(s) 20, 28, 260, 297, 347, 467, 644, 650, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 731
HpyF3I CTNAG 4 cut(s) 409, 593, 716, 759
HpySE526I ACGT 3 cut(s) 41, 141, 241
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 5 cut(s) 11, 32, 184, 442, 487
Kpn2I TCCGGA 1 cut(s) 897
Kzo9I GATC 3 cut(s) 131, 250, 561
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 3 cut(s) 579, 671, 753
LpnPI CCDG 9 cut(s) 114, 136, 239, 264, 562, 636, 683, 746, 859
LweI GCATC 1 cut(s) 801
MaeI CTAG 1 cut(s) 731
MaeII ACGT 3 cut(s) 41, 141, 241
MaeIII GTNAC 5 cut(s) 37, 70, 601, 701, 862
MalI GATC 3 cut(s) 133, 252, 563
MboI GATC 3 cut(s) 131, 250, 561
MboII GAAGA 4 cut(s) 216, 562, 647, 817
MfeI CAATTG 3 cut(s) 170, 617, 645
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 570, 760
MluCI AATT 7 cut(s) 170, 530, 617, 645, 674, 686, 901
MlyI GAGTC 3 cut(s) 113, 385, 401
MmeI TCCRAC 2 cut(s) 262, 881
MnlI CCTC 5 cut(s) 25, 341, 509, 588, 762
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 897
MseI TTAA 1 cut(s) 783
MspI CCGG 1 cut(s) 898
MunI CAATTG 3 cut(s) 170, 617, 645
Mva1269I GAATGC 1 cut(s) 58
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 1 cut(s) 731
NdeII GATC 3 cut(s) 131, 250, 561
NlaIII CATG 5 cut(s) 11, 32, 184, 442, 487
NmuCI GTSAC 5 cut(s) 37, 70, 601, 701, 862
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 2 cut(s) 11, 184
PagI TCATGA 2 cut(s) 438, 483
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 575
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 76, 712
PflFI GACNNNGTC 1 cut(s) 410
PleI GAGTC 3 cut(s) 113, 385, 401
PpsI GAGTC 3 cut(s) 113, 385, 401
PpuMI RGGWCCY 1 cut(s) 876
PscI ACATGT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 701
PspPI GGNCC 1 cut(s) 876
PspPPI RGGWCCY 1 cut(s) 876
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PsuI RGATCY 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 2 cut(s) 274, 614
RsaNI GTAC 2 cut(s) 273, 613
SapI GCTCTTC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 783
Sau3AI GATC 3 cut(s) 131, 250, 561
Sau96I GGNCC 1 cut(s) 876
SchI GAGTC 3 cut(s) 113, 385, 401
SduI GDGCHC 2 cut(s) 570, 760
SetI ASST 7 cut(s) 44, 144, 244, 436, 553, 655, 878
SfaNI GCATC 1 cut(s) 801
SfcI CTRYAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 876
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 7 cut(s) 170, 530, 617, 645, 674, 686, 901
SsiI CCGC 2 cut(s) 457, 670
SspMI CTAG 1 cut(s) 731
TaaI ACNGT 4 cut(s) 272, 293, 380, 862
TaiI ACGT 3 cut(s) 44, 144, 244
TaqI TCGA 2 cut(s) 162, 710
TasI AATT 7 cut(s) 170, 530, 617, 645, 674, 686, 901
TfiI GAWTC 2 cut(s) 76, 712
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TseFI GTSAC 5 cut(s) 37, 70, 601, 701, 862
Tsp45I GTSAC 5 cut(s) 37, 70, 601, 701, 862
TspDTI ATGAA 7 cut(s) 65, 208, 427, 472, 500, 562, 647
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 876
XceI RCATGY 2 cut(s) 11, 184
XspI CTAG 1 cut(s) 731
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.