FvH4_6g47721

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36106755 .. 36110740
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47721.t1

Sequence Viewer

Length: 1044 bp
ATGGCAGACACCACTGTGGTTATCTCTTCACCTTCACAAGGGTTGGTTCAAACTAAAGAATACTCTGTAGTGAAATTGCATACATGCATAATTTCTCTCATCGGCGTCTTAGGATTCTGCTTGCAACTCAAGTTCCCCAATGTGTCTCCATATGCGACGATCTACGGCTCTCAGCTGATGAACTCTCTGAAAACACTCTTCCAAAACGCAGTTGAACATCTTGTTCGTTCCGTTGGAGAATTGAAACGGAAGCTGGTTGATTTGAATCGCCGATTAATGGACAGTAATGCAATCGCAGCAGTCGCTCGTGCCTCTCAAAAATTGAAGGACCTGATCACCAGGGATGAGGGGCGGATGACAGAGCATGAAGCCCAGAATCAGAACCACACCAGTGAAGTCTCCATCCACTACATATTGTCTTCTCCGAGAGCAAGAGCTCCCAGAAAGCTTAACATAATGGAGGAGTTTGCAATTTGGAGAAGTTCTGTTCTGGCACTGCACAAGTGCATAGTCTCCCTCGTCACCATTTTAGGGCTTTGCCTCCAACTGGAGTTCGCAAATGCGTCTGCACTTGTGAAAGACTGTCGCAGAACTATTCTGATGAAACTATTTATTACCGACATATCTCTTTACTTCGGATTACTAAGTGTCATGATACTCCAAATCAATCAGAGTAATAGAGACTTTGGTGAATTCATGAATAAGATTGGCGTCTTGCTTGGAACTCTTGCTTCTATTTTAGAGTTGCTCATCTTGCTTCCGCCTTTCGGATGGCTCACACTCTTCTTCTGGAGCATGTATCTTATGATCACTGCAATTGGTTCGTACCAACTGTCTAAAACACTATGCAAAAGAGCAGTTGCAGCTCTTATTCTAGCTTTGGGTGAATTCCGAGTGAAACTGATCTCACTAAATGGCCGCTTAATGGGATCAGTTGCTGGACTCGGTCGTGCTTATGAGAAATTGAAGGTTCTGATCAAGAGGAGCCGCTATTCGACAGCGCATGATGAAACCAGGAACCTCAGCAAGGAGCTACCTGTGTAA

Protein Analysis

348

Amino Acids

38.82

Weight (kDa)

9.71

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 352, 761, 919, 988
AclWI GGATC 1 cut(s) 937
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 2 cut(s) 692, 887
AcyI GRCGYC 2 cut(s) 105, 711
AfaI GTAC 1 cut(s) 827
AfiI CCNNNNNNNGG 7 cut(s) 38, 277, 531, 547, 767, 925, 1027
AgsI TTSAA 6 cut(s) 50, 215, 244, 265, 325, 967
AjnI CCWGG 2 cut(s) 338, 1013
AleI CACNNNNGTG 2 cut(s) 14, 390
AluBI AGCT 7 cut(s) 175, 253, 437, 448, 866, 878, 1033
AluI AGCT 7 cut(s) 175, 253, 437, 448, 866, 878, 1033
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 4 cut(s) 150, 403, 517, 675
AlwI GGATC 1 cut(s) 937
AlwNI CAGNNNCTG 1 cut(s) 938
AoxI GGCC 1 cut(s) 916
ApeKI GCWGC 2 cut(s) 296, 863
ApoI RAATTY 2 cut(s) 692, 887
AseI ATTAAT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 5 cut(s) 21, 328, 514, 701, 896
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 439
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 1022
BbvI GCAGC 2 cut(s) 308, 875
BccI CCATC 2 cut(s) 410, 765
BceAI ACGGC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 2 cut(s) 340, 1015
BclI TGATCA 3 cut(s) 333, 807, 975
BcoDI GTCTC 4 cut(s) 150, 403, 517, 675
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 4 cut(s) 297, 864, 919, 988
BlsI GCNGC 4 cut(s) 298, 865, 920, 989
Bme1390I CCNGG 2 cut(s) 340, 1015
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 986, 1019
BmrFI CCNGG 2 cut(s) 340, 1015
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 569, 811
Bpu10I CCTNAGC 1 cut(s) 1022
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 105, 711
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 277, 531, 547, 767, 925, 1027
Bse1I ACTGG 2 cut(s) 390, 552
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 2 cut(s) 340, 1015
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 4 cut(s) 349, 360, 402, 776
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 7 cut(s) 38, 277, 531, 547, 767, 925, 1027
BseMII CTCAG 2 cut(s) 185, 1036
BseNI ACTGG 2 cut(s) 390, 552
BseRI GAGGAG 2 cut(s) 476, 997
BseXI GCAGC 2 cut(s) 308, 875
BsgI GTGCAG 2 cut(s) 482, 552
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 1 cut(s) 918
BsiEI CGRYCG 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 439
BslI CCNNNNNNNGG 7 cut(s) 38, 277, 531, 547, 767, 925, 1027
BsmAI GTCTC 4 cut(s) 150, 403, 517, 675
BsnI GGCC 1 cut(s) 918
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 6 cut(s) 159, 333, 807, 903, 929, 975
BspACI CCGC 4 cut(s) 352, 761, 919, 988
BspANI GGCC 1 cut(s) 918
BspCNI CTCAG 2 cut(s) 184, 1035
BspHI TCATGA 2 cut(s) 651, 696
BspLI GGNNCC 2 cut(s) 986, 1019
BspPI GGATC 1 cut(s) 937
BsrI ACTGG 2 cut(s) 390, 552
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 6 cut(s) 159, 333, 807, 903, 929, 975
BssNI GRCGYC 2 cut(s) 105, 711
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 340, 1015
Bst4CI ACNGT 4 cut(s) 16, 284, 584, 834
Bst6I CTCTTC 3 cut(s) 31, 203, 788
BstACI GRCGYC 2 cut(s) 105, 711
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 109, 171, 644, 1022
BstENI CCTNNNNNAGG 2 cut(s) 36, 1025
BstF5I GGATG 4 cut(s) 349, 360, 402, 776
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 6 cut(s) 162, 336, 810, 906, 932, 978
BstMAI GTCTC 4 cut(s) 150, 403, 517, 675
BstMBI GATC 6 cut(s) 159, 333, 807, 903, 929, 975
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 4 cut(s) 296, 302, 754, 863
BstNI CCWGG 2 cut(s) 340, 1015
BstNSI RCATGY 2 cut(s) 87, 799
BstSCI CCNGG 2 cut(s) 338, 1013
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 308, 875
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 1 cut(s) 918
BtsCI GGATG 4 cut(s) 349, 360, 402, 776
BtsI GCAGTG 2 cut(s) 494, 810
BtsIMutI CAGTG 4 cut(s) 12, 397, 494, 810
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 938
CciI TCATGA 2 cut(s) 651, 696
CfoI GCGC 1 cut(s) 1003
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 3 cut(s) 94, 552, 700
Csp6I GTAC 1 cut(s) 826
CviAII CATG 6 cut(s) 84, 365, 652, 697, 796, 1004
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 4 cut(s) 109, 171, 644, 1022
DpnI GATC 6 cut(s) 161, 335, 809, 905, 931, 977
DpnII GATC 6 cut(s) 159, 333, 807, 903, 929, 975
EaeI YGGCCR 1 cut(s) 916
Eam1104I CTCTTC 3 cut(s) 31, 203, 788
EarI CTCTTC 3 cut(s) 31, 203, 788
EciI GGCGGA 2 cut(s) 367, 750
Ecl136II GAGCTC 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 437
EcoNI CCTNNNNNAGG 2 cut(s) 36, 1025
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 2 cut(s) 692, 887
EcoRII CCWGG 2 cut(s) 338, 1013
EcoT22I ATGCAT 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 439
FaeI CATG 6 cut(s) 87, 368, 655, 700, 799, 1007
FatI CATG 6 cut(s) 83, 364, 651, 696, 795, 1003
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 3 cut(s) 333, 807, 975
Fnu4HI GCNGC 4 cut(s) 297, 864, 919, 988
FokI GGATG 4 cut(s) 356, 367, 389, 783
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 4 cut(s) 297, 864, 919, 988
FspBI CTAG 1 cut(s) 875
GlaI GCGC 1 cut(s) 1002
GluI GCNGC 4 cut(s) 297, 864, 919, 988
GsuI CTGGAG 2 cut(s) 569, 811
HaeIII GGCC 1 cut(s) 918
HgaI GACGC 3 cut(s) 94, 552, 700
HhaI GCGC 1 cut(s) 1003
Hin1I GRCGYC 2 cut(s) 105, 711
Hin1II CATG 6 cut(s) 87, 368, 655, 700, 799, 1007
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 4 cut(s) 114, 265, 376, 942
HphI GGTGA 5 cut(s) 21, 328, 514, 701, 896
Hpy188I TCNGA 9 cut(s) 189, 381, 426, 600, 638, 672, 770, 893, 975
Hpy188III TCNNGA 4 cut(s) 652, 697, 790, 979
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 42, 319, 961
HpyCH4III ACNGT 4 cut(s) 16, 284, 584, 834
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 302, 754, 863
HpyF3I CTNAG 4 cut(s) 109, 171, 644, 1022
Hsp92I GRCGYC 2 cut(s) 105, 711
Hsp92II CATG 6 cut(s) 87, 368, 655, 700, 799, 1007
HspAI GCGC 1 cut(s) 1001
Ksp22I TGATCA 3 cut(s) 333, 807, 975
Kzo9I GATC 6 cut(s) 159, 333, 807, 903, 929, 975
LmnI GCTCC 4 cut(s) 442, 792, 984, 1030
Lsp1109I GCAGC 2 cut(s) 308, 875
MaeI CTAG 1 cut(s) 875
MaeIII GTNAC 1 cut(s) 520
MalI GATC 6 cut(s) 161, 335, 809, 905, 931, 977
MboI GATC 6 cut(s) 159, 333, 807, 903, 929, 975
MboII GAAGA 5 cut(s) 18, 190, 411, 775, 778
MfeI CAATTG 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 9 cut(s) 74, 90, 239, 320, 471, 692, 816, 887, 962
MlyI GAGTC 1 cut(s) 936
MmeI TCCRAC 2 cut(s) 214, 568
MnlI CCTC 7 cut(s) 322, 340, 454, 527, 551, 975, 1031
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 3 cut(s) 275, 450, 923
MslI CAYNNNNRTG 2 cut(s) 14, 390
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 2 cut(s) 340, 1015
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 2 cut(s) 340, 1015
MwoI GCNNNNNNNGC 4 cut(s) 296, 302, 754, 863
NdeI CATATG 1 cut(s) 151
NdeII GATC 6 cut(s) 159, 333, 807, 903, 929, 975
NlaIII CATG 6 cut(s) 87, 368, 655, 700, 799, 1007
NlaIV GGNNCC 2 cut(s) 986, 1019
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 2 cut(s) 87, 799
OliI CACNNNNGTG 2 cut(s) 14, 390
PagI TCATGA 2 cut(s) 651, 696
PfeI GAWTC 3 cut(s) 114, 265, 376
PflFI GACNNNGTC 1 cut(s) 945
PkrI GCNGC 4 cut(s) 298, 865, 920, 989
PleI GAGTC 1 cut(s) 936
PpsI GAGTC 1 cut(s) 936
PpuMI RGGWCCY 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 439
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 338, 1013
PspGI CCWGG 2 cut(s) 338, 1013
PspN4I GGNNCC 2 cut(s) 986, 1019
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 938
PsyI GACNNNGTC 1 cut(s) 945
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
RseI CAYNNNNRTG 2 cut(s) 14, 390
SacI GAGCTC 1 cut(s) 439
SaqAI TTAA 3 cut(s) 275, 450, 923
SatI GCNGC 4 cut(s) 297, 864, 919, 988
Sau3AI GATC 6 cut(s) 159, 333, 807, 903, 929, 975
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 936
ScrFI CCNGG 2 cut(s) 340, 1015
SduI GDGCHC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 2 cut(s) 14, 390
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 9 cut(s) 74, 90, 239, 320, 471, 692, 816, 887, 962
SsiI CCGC 4 cut(s) 352, 761, 919, 988
SspMI CTAG 1 cut(s) 875
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 338, 1013
TaaI ACNGT 4 cut(s) 16, 284, 584, 834
TaqI TCGA 1 cut(s) 995
TaqII GACCGA 1 cut(s) 935
TasI AATT 9 cut(s) 74, 90, 239, 320, 471, 692, 816, 887, 962
TauI GCSGC 2 cut(s) 921, 990
TfiI GAWTC 3 cut(s) 114, 265, 376
Tru1I TTAA 3 cut(s) 275, 450, 923
Tru9I TTAA 3 cut(s) 275, 450, 923
TscAI CASTG 4 cut(s) 19, 397, 501, 817
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 2 cut(s) 296, 863
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 6 cut(s) 194, 381, 617, 685, 713, 1023
TspGWI ACGGA 2 cut(s) 220, 262
TspRI CASTG 4 cut(s) 19, 397, 501, 817
Tth111I GACNNNGTC 1 cut(s) 945
VpaK11BI GGWCC 1 cut(s) 328
VspI ATTAAT 1 cut(s) 275
XagI CCTNNNNNAGG 2 cut(s) 36, 1025
XapI RAATTY 2 cut(s) 692, 887
XceI RCATGY 2 cut(s) 87, 799
XspI CTAG 1 cut(s) 875
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.