pycom111g05070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000247
Physical Location & Seq
Forward (+)
3253004 .. 3254085
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g05070.2

Sequence Viewer

Length: 549 bp
ATGCAAAGAACCCACATCCCCGTTATGCACGTCGGAACTTCGCTAGCAAATGAGTTTGGCAGCGCTATGGTGGAGGGTGGTCAGTACAAATCTCTACCGGCAGCACACAAATGTATATTCCGTCTCCTCAACATCCTAGGAGTCCTCCTCCAGGTGAAGCATGCGACCGGAAATTTACCGTCTCCATTTGTCACAGACCACAAAACTGTTGTGATGTTGATTGCTGATTTACTCACTTACGCGGGGACATTGGAGACTGCCAAGATTCTCCAAGCTTCCAACAAAGCAAATATATATGAATTGATGAACAACATCAGCCTCTTGTGTGGAACTCTTGCGTTGGTTCTACAGGTGCTCCTCCTCGTTCCAGCTTTCGGGTGGTTTACTCTTGCATGTTGGGCCGTATATTTTGTGATAATTGGGACCAAGTCCTACCAAACGCTAAGAACACTGTGTACTGACGCTGTTCCTTATGTCCGTGACAAAATAAAGGAGGTGATGAGGTTGAACGGCAGCAAAGAATCCCAGAACCAGAACGGGGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.98

Weight (kDa)

8.91

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 242
AciI CCGC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 2 cut(s) 86, 457
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 151, 374, 538
AgsI TTSAA 1 cut(s) 508
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 275, 371
AluI AGCT 2 cut(s) 275, 371
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 128, 186, 248
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 60, 101, 513
ApoI RAATTY 1 cut(s) 172
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 399, 423
AsuHPI GGTGA 2 cut(s) 166, 508
AsuNHI GCTAGC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 423
AvrII CCTAGG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 72, 113, 525
BceAI ACGGC 2 cut(s) 386, 526
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 128, 186, 248
BfaI CTAG 2 cut(s) 44, 137
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 3 cut(s) 61, 102, 514
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 3 cut(s) 62, 103, 515
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 399, 423
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 532
BmtI GCTAGC 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 374, 538
Bse118I RCCGGY 1 cut(s) 97
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 15, 132, 547
BseLI CCNNNNNNNGG 3 cut(s) 151, 374, 538
BseRI GAGGAG 4 cut(s) 116, 137, 347, 350
BseXI GCAGC 3 cut(s) 72, 113, 525
Bsh1236I CGCG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 98, 168
BslFI GGGAC 2 cut(s) 259, 436
BslI CCNNNNNNNGG 3 cut(s) 151, 374, 538
BsmAI GTCTC 3 cut(s) 128, 186, 248
BsmBI CGTCTC 2 cut(s) 128, 186
BsmFI GGGAC 2 cut(s) 259, 436
BsnI GGCC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 357
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 401
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 180, 208, 453
BstC8I GCNNGC 2 cut(s) 45, 162
BstDEI CTNAG 1 cut(s) 443
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 3 cut(s) 15, 132, 547
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 3 cut(s) 128, 186, 248
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 164, 396
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 347
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 72, 113, 525
BsuRI GGCC 1 cut(s) 401
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 3 cut(s) 15, 132, 547
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 45, 162
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 399, 423
CseI GACGC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 85, 456
CviAII CATG 2 cut(s) 161, 393
CviJI RGCY 4 cut(s) 275, 318, 371, 401
CviKI_1 RGCY 4 cut(s) 275, 318, 371, 401
CviQI GTAC 2 cut(s) 85, 456
DdeI CTNAG 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 423
Eco47III AGCGCT 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 2 cut(s) 128, 186
FaeI CATG 2 cut(s) 164, 396
FaqI GGGAC 2 cut(s) 259, 436
FatI CATG 2 cut(s) 160, 392
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 61, 102, 514
FokI GGATG 2 cut(s) 2, 119
Fsp4HI GCNGC 3 cut(s) 61, 102, 514
FspBI CTAG 2 cut(s) 44, 137
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 61, 102, 514
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 401
HapII CCGG 2 cut(s) 98, 168
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 164, 396
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 3 cut(s) 141, 265, 521
HpaII CCGG 2 cut(s) 98, 168
HphI GGTGA 2 cut(s) 166, 508
Hpy166II GTNNAC 2 cut(s) 384, 456
Hpy188I TCNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 384, 456
Hpy99I CGWCG 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 180, 208, 453
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 3 cut(s) 4, 28, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 164, 396
HspAI GCGC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 8 cut(s) 111, 137, 164, 181, 335, 381, 539, 545
Lsp1109I GCAGC 3 cut(s) 72, 113, 525
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 44, 137
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 190, 479
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 3 cut(s) 172, 299, 417
MlyI GAGTC 1 cut(s) 150
MmeI TCCRAC 2 cut(s) 13, 303
MnlI CCTC 9 cut(s) 67, 137, 155, 158, 329, 368, 371, 487, 495
MslI CAYNNNNRTG 1 cut(s) 109
MspI CCGG 2 cut(s) 98, 168
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 398
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 164, 396
NlaIV GGNNCC 1 cut(s) 424
NmuCI GTSAC 2 cut(s) 190, 479
NspI RCATGY 2 cut(s) 164, 396
PaeI GCATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 265, 521
PflFI GACNNNGTC 1 cut(s) 427
PkrI GCNGC 3 cut(s) 62, 103, 515
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 399, 423
PsrI GAACNNNNNNTAC 2 cut(s) 439, 471
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 2 cut(s) 86, 457
RsaNI GTAC 2 cut(s) 85, 456
RseI CAYNNNNRTG 1 cut(s) 109
SatI GCNGC 3 cut(s) 61, 102, 514
Sau96I GGNCC 2 cut(s) 399, 423
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 357
SetI ASST 7 cut(s) 33, 156, 277, 354, 373, 498, 506
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 109
SphI GCATGC 1 cut(s) 164
Sse9I AATT 3 cut(s) 172, 299, 417
SsiI CCGC 1 cut(s) 242
SspMI CTAG 2 cut(s) 44, 137
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 180, 208, 453
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 172, 299, 417
TatI WGTACW 2 cut(s) 84, 455
TfiI GAWTC 2 cut(s) 265, 521
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 2 cut(s) 190, 479
TseI GCWGC 3 cut(s) 60, 101, 513
Tsp45I GTSAC 2 cut(s) 190, 479
TspDTI ATGAA 2 cut(s) 312, 320
TspGWI ACGGA 2 cut(s) 110, 467
TspRI CASTG 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 172
XceI RCATGY 2 cut(s) 164, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmaJI CCTAGG 1 cut(s) 136
XspI CTAG 2 cut(s) 44, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.