FvH4_6g47660

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36066758 .. 36070100
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47660.t1

Sequence Viewer

Length: 1068 bp
ATGGGCAGCATTGCCGAAGATCTTCAACGCCCTCTACTAGATGGAGTACGTCTCGCCTCATTCCACCGCCGTACTTTTATCGGAACGTCATCTTCAACCGCGCCCTCCTCTTCCTCTGGTATACCCTTCGCCCTCGTTCTCTTCTACTCCGCCGTCCTATACACCGCTACGTCGGCTTCAACGACATCTTCTTCTTCAATCACGTACGTCCTGCTAGTCTTCCTCTTTCTCGGCGTGTCATATCGCACTGCGCCGCCGCTCTCTTTCACTACGCCCCCACGCGTCTTAGCTAGTCTTCCTCTTTCTAAACGGCCGTCGTCTTCCACTCCTCATCTATGGCTTTGGCCACTTCTACGGCTTAGTCTTCTTGAATCAACCCCTCGATCACGGCATGCTGGATCACAGAGGCTGCTATGTGATTGTCGTAGCACCAAGACAACGGGGCAGGGTGCTTCTGTGGCATCGCCTACAAATCCTACATATACATATGCTCTCATCGGCTTCTTAGGCTTCTGCATCCAACAGAAGGGATCTCCATATGAAACAGTCCACGGCACTCGCTTGATGAACCTATTAATTATCTCGATATCGGCTCACGTTTTCTGTATAAATATGATTCCAACAGCTGGTGGCGGTGATGATGCAGATTTGGAAGATTTGATGAAATATGTTTTCCTCTTACTTGGATACCTGCCTCCGATTATCGAATTGATCATCCTTACAGAAAAGTTTGGATTGTTTATACTCTCCGTCTGGAGCATCTGCCTTTTATTGTTCGTGTGTAAGTATCACCAGTCTCTGCTAACACTGTGCAATAATGCAGTAAAACATGGTATTAAAGCCTTATTGGGAGAATTCGGACAGACGCTGGGTGATTGGAACAGCGGCAGGAGGATTAGAAATGATGAAGCCGAAAAGATGAGAATCAGAAATCTCAAGCGCGAAATTGAGCTTCAGCCCCTGAACCAGAACATCAGCAATGAAAGGCGCGCTACAGAGCATCAATCCCAGAATCAGAATCACACCAACGTGACAGAGTATGCAATATCTATACTTGATAACTCTTGA

Protein Analysis

356

Amino Acids

39.23

Weight (kDa)

9.07

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 699
AccB7I CCANNNNNTGG 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 121
AccII CGCG 4 cut(s) 101, 282, 942, 990
AciI CCGC 8 cut(s) 67, 99, 150, 165, 254, 257, 633, 885
AclWI GGATC 2 cut(s) 406, 538
AcoI YGGCCR 2 cut(s) 311, 344
AcsI RAATTY 1 cut(s) 854
AcuI CTGAAG 1 cut(s) 938
AfaI GTAC 3 cut(s) 48, 73, 206
AfiI CCNNNNNNNGG 2 cut(s) 526, 626
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 26, 96, 180, 198, 371
AleI CACNNNNGTG 1 cut(s) 1028
AluBI AGCT 3 cut(s) 290, 626, 952
AluI AGCT 3 cut(s) 290, 626, 952
Alw26I GTCTC 2 cut(s) 56, 801
AlwI GGATC 2 cut(s) 406, 538
AlwNI CAGNNNCTG 4 cut(s) 409, 799, 868, 961
AoxI GGCC 2 cut(s) 311, 344
ApeKI GCWGC 2 cut(s) 6, 409
ApoI RAATTY 1 cut(s) 854
AseI ATTAAT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 5 cut(s) 103, 253, 942, 990, 992
AsuHPI GGTGA 3 cut(s) 647, 782, 884
BalI TGGCCA 1 cut(s) 346
BbsI GAAGAC 4 cut(s) 211, 287, 312, 356
BbvI GCAGC 2 cut(s) 18, 396
BccI CCATC 1 cut(s) 35
BceAI ACGGC 7 cut(s) 54, 137, 298, 326, 371, 404, 568
BciVI GTATCC 1 cut(s) 680
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 56, 801
BfaI CTAG 3 cut(s) 38, 215, 291
BfmI CTRYAG 1 cut(s) 993
BfuAI ACCTGC 1 cut(s) 699
BfuI GTATCC 1 cut(s) 680
BglII AGATCT 1 cut(s) 19
BisI GCNGC 5 cut(s) 7, 254, 257, 410, 886
BlsI GCNGC 5 cut(s) 8, 255, 258, 411, 887
BmsI GCATC 5 cut(s) 470, 525, 631, 768, 1009
BpiI GAAGAC 4 cut(s) 211, 287, 312, 356
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 775
BpuEI CTTGAG 1 cut(s) 920
BsaAI YACGTR 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 550
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 626
Bse1I ACTGG 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 9, 985
Bse8I GATNNNNATC 1 cut(s) 923
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 2 cut(s) 516, 714
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 2 cut(s) 526, 626
BseMI GCAATG 2 cut(s) 9, 985
BseNI ACTGG 1 cut(s) 793
BsePI GCGCGC 1 cut(s) 988
BseRI GAGGAG 2 cut(s) 97, 318
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 18, 396
BseYI CCCAGC 1 cut(s) 868
Bsh1236I CGCG 4 cut(s) 101, 282, 942, 990
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 2 cut(s) 313, 346
BsiEI CGRYCG 1 cut(s) 314
BsiWI CGTACG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 526, 626
BsmAI GTCTC 2 cut(s) 56, 801
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 313, 346
Bsp143I GATC 5 cut(s) 19, 383, 398, 530, 711
BspACI CCGC 8 cut(s) 67, 99, 150, 165, 254, 257, 633, 885
BspANI GGCC 2 cut(s) 313, 346
BspFNI CGCG 4 cut(s) 101, 282, 942, 990
BspMI ACCTGC 1 cut(s) 699
BspPI GGATC 2 cut(s) 406, 538
BsrBI CCGCTC 1 cut(s) 259
BsrDI GCAATG 2 cut(s) 9, 985
BsrI ACTGG 1 cut(s) 793
BssECI CCNNGG 1 cut(s) 550
BssHII GCGCGC 1 cut(s) 988
BssMI GATC 5 cut(s) 19, 383, 398, 530, 711
BssNAI GTATAC 1 cut(s) 122
Bst1107I GTATAC 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 547, 810
Bst6I CTCTTC 2 cut(s) 115, 146
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 393, 990
BstDEI CTNAG 3 cut(s) 286, 359, 505
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 516, 714
BstFNI CGCG 4 cut(s) 101, 282, 942, 990
BstHHI GCGC 5 cut(s) 103, 253, 942, 990, 992
BstKTI GATC 5 cut(s) 22, 386, 401, 533, 714
BstMAI GTCTC 2 cut(s) 56, 801
BstMBI GATC 5 cut(s) 19, 383, 398, 530, 711
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 3 cut(s) 173, 458, 507
BstNSI RCATGY 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 4 cut(s) 101, 282, 942, 990
BstV1I GCAGC 2 cut(s) 18, 396
BstV2I GAAGAC 4 cut(s) 211, 287, 312, 356
BstX2I RGATCY 2 cut(s) 19, 530
BstYI RGATCY 2 cut(s) 19, 530
BstZ17I GTATAC 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 680
BsuRI GGCC 2 cut(s) 313, 346
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 516, 714
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 806
BveI ACCTGC 1 cut(s) 699
Cac8I GCNNGC 2 cut(s) 393, 990
CaiI CAGNNNCTG 4 cut(s) 409, 799, 868, 961
CfoI GCGC 5 cut(s) 103, 253, 942, 990, 992
CseI GACGC 2 cut(s) 271, 874
Csp6I GTAC 3 cut(s) 47, 72, 205
CviAII CATG 2 cut(s) 392, 830
CviQI GTAC 3 cut(s) 47, 72, 205
DdeI CTNAG 3 cut(s) 286, 359, 505
DpnI GATC 5 cut(s) 21, 385, 400, 532, 713
DpnII GATC 5 cut(s) 19, 383, 398, 530, 711
EaeI YGGCCR 2 cut(s) 311, 344
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 2 cut(s) 115, 146
EarI CTCTTC 2 cut(s) 115, 146
EciI GGCGGA 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 311
Eco32I GATATC 1 cut(s) 588
Eco52I CGGCCG 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 854
EcoRV GATATC 1 cut(s) 588
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 395, 833
FatI CATG 2 cut(s) 391, 829
FauNDI CATATG 2 cut(s) 487, 538
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 7, 254, 257, 410, 886
FokI GGATG 2 cut(s) 503, 701
Fsp4HI GCNGC 5 cut(s) 7, 254, 257, 410, 886
FspBI CTAG 3 cut(s) 38, 215, 291
GlaI GCGC 5 cut(s) 102, 252, 941, 989, 991
GluI GCNGC 5 cut(s) 7, 254, 257, 410, 886
GsaI CCCAGC 1 cut(s) 872
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 2 cut(s) 313, 346
HgaI GACGC 2 cut(s) 271, 874
HhaI GCGC 5 cut(s) 103, 253, 942, 990, 992
Hin1II CATG 2 cut(s) 395, 833
Hin6I GCGC 5 cut(s) 101, 251, 940, 988, 990
HinP1I GCGC 5 cut(s) 101, 251, 940, 988, 990
HinfI GANTC 5 cut(s) 371, 616, 924, 1012, 1018
HphI GGTGA 3 cut(s) 647, 782, 884
Hpy166II GTNNAC 2 cut(s) 122, 550
Hpy188I TCNGA 5 cut(s) 83, 699, 860, 929, 1017
Hpy188III TCNNGA 4 cut(s) 368, 583, 754, 1065
Hpy8I GTNNAC 2 cut(s) 122, 550
Hpy99I CGWCG 2 cut(s) 175, 319
HpyAV CCTTC 2 cut(s) 136, 520
HpyCH4III ACNGT 2 cut(s) 547, 810
HpyCH4IV ACGT 7 cut(s) 49, 86, 170, 203, 207, 597, 1029
HpyCH4V TGCA 5 cut(s) 516, 644, 813, 821, 1043
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 458, 507
HpyF3I CTNAG 3 cut(s) 286, 359, 505
HpySE526I ACGT 7 cut(s) 49, 86, 170, 203, 207, 597, 1029
Hsp92II CATG 2 cut(s) 395, 833
HspAI GCGC 5 cut(s) 101, 251, 940, 988, 990
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 5 cut(s) 19, 383, 398, 530, 711
LmnI GCTCC 1 cut(s) 756
Lsp1109I GCAGC 2 cut(s) 18, 396
LweI GCATC 5 cut(s) 470, 525, 631, 768, 1009
MaeI CTAG 3 cut(s) 38, 215, 291
MaeII ACGT 7 cut(s) 49, 86, 170, 203, 207, 597, 1029
MaeIII GTNAC 1 cut(s) 1030
MalI GATC 5 cut(s) 21, 385, 400, 532, 713
MbiI CCGCTC 1 cut(s) 259
MboI GATC 5 cut(s) 19, 383, 398, 530, 711
MflI RGATCY 2 cut(s) 19, 530
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 4 cut(s) 576, 707, 854, 945
MluI ACGCGT 1 cut(s) 280
MluNI TGGCCA 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 544, 644
Mox20I TGGCCA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 21
MscI TGGCCA 1 cut(s) 346
MseI TTAA 2 cut(s) 575, 837
MslI CAYNNNNRTG 1 cut(s) 1028
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 2 cut(s) 626, 885
MvnI CGCG 4 cut(s) 101, 282, 942, 990
MwoI GCNNNNNNNGC 3 cut(s) 173, 458, 507
NdeI CATATG 2 cut(s) 487, 538
NdeII GATC 5 cut(s) 19, 383, 398, 530, 711
NlaIII CATG 2 cut(s) 395, 833
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 1030
NspI RCATGY 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 1028
PaeI GCATGC 1 cut(s) 395
PauI GCGCGC 1 cut(s) 988
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 5 cut(s) 371, 616, 924, 1012, 1018
Pfl23II CGTACG 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 5 cut(s) 8, 255, 258, 411, 887
Ppu21I YACGTR 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 868
PspLI CGTACG 1 cut(s) 204
PstNI CAGNNNCTG 4 cut(s) 409, 799, 868, 961
PsuI RGATCY 2 cut(s) 19, 530
PteI GCGCGC 1 cut(s) 988
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 48, 73, 206
RsaNI GTAC 3 cut(s) 47, 72, 205
RseI CAYNNNNRTG 1 cut(s) 1028
SaqAI TTAA 2 cut(s) 575, 837
SatI GCNGC 5 cut(s) 7, 254, 257, 410, 886
Sau3AI GATC 5 cut(s) 19, 383, 398, 530, 711
SfaNI GCATC 5 cut(s) 470, 525, 631, 768, 1009
SfcI CTRYAG 1 cut(s) 993
SmiMI CAYNNNNRTG 1 cut(s) 1028
SmlI CTYRAG 1 cut(s) 935
SmoI CTYRAG 1 cut(s) 935
SphI GCATGC 1 cut(s) 395
Sse9I AATT 4 cut(s) 576, 707, 854, 945
SsiI CCGC 8 cut(s) 67, 99, 150, 165, 254, 257, 633, 885
SspMI CTAG 3 cut(s) 38, 215, 291
TaaI ACNGT 2 cut(s) 547, 810
TaiI ACGT 7 cut(s) 52, 89, 173, 206, 210, 600, 1032
TaqI TCGA 3 cut(s) 382, 584, 705
TasI AATT 4 cut(s) 576, 707, 854, 945
TauI GCSGC 3 cut(s) 256, 259, 888
TfiI GAWTC 5 cut(s) 371, 616, 924, 1012, 1018
Tru1I TTAA 2 cut(s) 575, 837
Tru9I TTAA 2 cut(s) 575, 837
TscAI CASTG 2 cut(s) 253, 813
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 2 cut(s) 6, 409
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 5 cut(s) 555, 581, 677, 921, 996
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 2 cut(s) 253, 813
Van91I CCANNNNNTGG 1 cut(s) 626
VspI ATTAAT 1 cut(s) 575
XapI RAATTY 1 cut(s) 854
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 3 cut(s) 38, 215, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.