Rh2AG240800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000247
Physical Location & Seq
Forward (+)
26302672 .. 26303342
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG240800.1

Sequence Viewer

Length: 555 bp
ATGGATCTTAACGATGCGGTTAATCTTCAGTCTCAACCAAACATAAGGCAAGAAGGTCACACTTCTCATGGGAAAACTTTGCACCAGTGTATTTTTTTACCAGTCATGGGCATTTTCGGGTGGCTACTCCAACTGAAGTACACATCTGCTAGTGCATCTCCATTCGTCACCGACTATGTCACCATGCTGATGTTTATCGTTGCTTTCTTTGTTTACTTTGGGTCCTTGACTGTGAAGCTATTAGCCCGTGCTCCCAGTTCAGACATGGGAGAGTTCATCAACAACATTAACTTTTTGTTCGGAACTCTGGCCTCTGTTTTGCTACTGCTTATCCTTGTCCGAGCTTTCGGGTTGTTTGCCCTCCTCTTGTGGACAATTTATCTTGTGAGGGAAGTTGCAACTAAGAAGTCGTACAGGAATGCAGTTTGTGATGTCTTCAACAAAGTAAAAGAGATGATTAATGGTCACTTGGTGGAGATTAATGCTGTACAACCCCAATCCAGGCCACATATCGTTGTACAAATCCAAGATGCAGGAGAACCGAATGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.59

Weight (kDa)

7.82

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 11, 155
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 4 cut(s) 140, 413, 489, 519
AfiI CCNNNNNNNGG 2 cut(s) 107, 501
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 2 cut(s) 238, 344
AluI AGCT 2 cut(s) 238, 344
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 309, 503
AseI ATTAAT 2 cut(s) 459, 480
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 160, 172
AvaII GGWCC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 502
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 4, 164, 520
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 501
Bse1I ACTGG 3 cut(s) 85, 101, 255
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 502
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 107, 501
BseNI ACTGG 3 cut(s) 85, 101, 255
BseRI GAGGAG 1 cut(s) 353
BshFI GGCC 2 cut(s) 311, 505
BsiHKAI GWGCWC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 107, 501
BsmAI GTCTC 1 cut(s) 36
BsmI GAATGC 2 cut(s) 424, 550
BsnI GGCC 2 cut(s) 311, 505
Bsp1286I GDGCHC 1 cut(s) 253
Bsp1407I TGTACA 2 cut(s) 487, 517
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 311, 505
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 2 cut(s) 487, 517
BsrI ACTGG 3 cut(s) 85, 101, 255
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 1 cut(s) 232
BstAUI TGTACA 2 cut(s) 487, 517
BstDEI CTNAG 1 cut(s) 402
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 500
BstV2I GAAGAC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 311, 505
BtsIMutI CAGTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 4 cut(s) 139, 412, 488, 518
CviAII CATG 4 cut(s) 68, 106, 184, 265
CviJI RGCY 6 cut(s) 124, 238, 245, 311, 344, 505
CviKI_1 RGCY 6 cut(s) 124, 238, 245, 311, 344, 505
CviQI GTAC 4 cut(s) 139, 412, 488, 518
DdeI CTNAG 1 cut(s) 402
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 11, 155
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 500
FaeI CATG 4 cut(s) 71, 109, 187, 268
FaiI YATR 7 cut(s) 44, 69, 107, 177, 185, 266, 510
FatI CATG 4 cut(s) 67, 105, 183, 264
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 311, 505
Hin1II CATG 4 cut(s) 71, 109, 187, 268
HphI GGTGA 2 cut(s) 160, 172
Hpy166II GTNNAC 3 cut(s) 141, 214, 372
Hpy188I TCNGA 3 cut(s) 262, 302, 341
Hpy8I GTNNAC 3 cut(s) 141, 214, 372
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 82, 155, 398, 422, 533
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 4 cut(s) 71, 109, 187, 268
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 98, 114, 268, 293, 400, 487, 514, 519
LweI GCATC 3 cut(s) 4, 164, 520
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 56, 166, 178, 464
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 17, 427
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 1 cut(s) 375
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 4 cut(s) 322, 371, 374, 381
MseI TTAA 5 cut(s) 9, 21, 288, 459, 480
MslI CAYNNNNRTG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 502
Mva1269I GAATGC 2 cut(s) 424, 550
MvaI CCWGG 1 cut(s) 502
NdeII GATC 1 cut(s) 4
NlaIII CATG 4 cut(s) 71, 109, 187, 268
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 4 cut(s) 56, 166, 178, 464
PctI GAATGC 2 cut(s) 424, 550
PflFI GACNNNGTC 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 222
PshBI ATTAAT 2 cut(s) 459, 480
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 4 cut(s) 140, 413, 489, 519
RsaNI GTAC 4 cut(s) 139, 412, 488, 518
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 5 cut(s) 9, 21, 288, 459, 480
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 1 cut(s) 253
SetI ASST 3 cut(s) 58, 240, 346
SfaNI GCATC 3 cut(s) 4, 164, 520
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 1 cut(s) 375
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 1 cut(s) 232
TasI AATT 1 cut(s) 375
TatI WGTACW 3 cut(s) 138, 487, 517
Tru1I TTAA 5 cut(s) 9, 21, 288, 459, 480
Tru9I TTAA 5 cut(s) 9, 21, 288, 459, 480
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 4 cut(s) 56, 166, 178, 464
Tsp45I GTSAC 4 cut(s) 56, 166, 178, 464
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 92
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 222
VspI ATTAAT 2 cut(s) 459, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.