Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000247

Physical Location & Seq

Genomic Coordinates Forward (+)

6554488 .. 6556145

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGACAGACGGCCACCAGAACGCCAATGCAAGACTACGGAGCACAAGGGGGGAGAGTACGCCACGGGGACATTCTATAATGATATTGCTGGCATTGCATGCATTCATGTTTTCTCTCATCGGAGTCTTAGGCGTCTGCCTCCAACTCAAGTTTCCAGATGTGTCTACATATGCAACCGTCTACGGCACTGTGATGATGGACCTCATCATTATTGCGACATGCTTTTACATCGTCTCTTTAGTAGTGATGGGAATCCTAGCTGCTCGCAATAATACAGATTATGAAGATCTGATGAACAAAATTTGCCTCTTACTTGGAAGTCTGTCCGTGATTTTAGAGTTGCTCATCCTTATTTCACCATTCGGATGGATTGCACTCTTCTTCTGGACCACCTACCTTTTATGCTTCGTGAGTAAGTCTTACCAGGGGCTGAAAAAACTCTACCAAAGTGCAGTTGCACAGCTTGTTCAAGACTTTGGAGAATTGAAACAGAAGTTGGTTGATTTGAATCGCCGCGTGATGGGCAGTAATACAATTGCGGCACTTGGTCGTGCCTATCAGACATTGAAGAACCTGATCATCAGGAATGAGGGGCGCGTGACAGGGCATGAAGCCCGGAACACGAACCAGAACCAGAACAGCACCACTGAAGAACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

221

Amino Acids

24.67

Weight (kDa)

8.68

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20722 FvH4_6g47643 FvH4_6g47644 FvH4_6g47651 FvH4_6g47660 FvH4_6g47681 FvH4_6g47710 FvH4_6g47721 FvH4_6g47722 FvH4_6g47723 FvH4_6g47731 FvH4_6g47732 FvH4_7g07791
malus_domestica	MD01G1174200.v1.1 MD09G1046300.v1.1 MD17G1055400.v1.1
prunus_persica	Prupe.3G260500_v2.0.a1 Prupe.3G260600_v2.0.a1 Prupe.3G260700_v2.0.a1 Prupe.3G260800_v2.0.a1 Prupe.3G260900_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1 Prupe.3G261100_v2.0.a1
pyrus_communis	pycom01g18590 pycom08g18530 pycom09g03820 pycom09g04260 pycom111g03590 pycom111g04940 pycom111g05070 pycom17g05450
rosa_chinensis	RchiOBHm_Chr1g0315341 RchiOBHm_Chr2g0166831
rosa_laevigata	RLG00000009567 RLG00000009568 RLG00000013046 RLG00000018053 RLG00000018054 RLG00000018055 RLG00000021644 RLG00000021647 RLG00000021648 RLG00000021651 RLG00000021653 RLG00000021655 RLG00000021656 RLG00000021661 RLG00000021668
rosa_multiflora	Rmu_co8319251.1_g000001 Rmu_sc0000612.1_g000004 Rmu_sc0000612.1_g000013 Rmu_sc0000612.1_g000022 Rmu_sc0000690.1_g000022 Rmu_sc0000768.1_g000029 Rmu_sc0000820.1_g000021 Rmu_sc0000949.1_g000012 Rmu_sc0001432.1_g000005 Rmu_sc0002322.1_g000037 Rmu_sc0002539.1_g000106 Rmu_sc0002735.1_g000005 Rmu_sc0002966.1_g000004 Rmu_sc0002966.1_g000006 Rmu_sc0002966.1_g000007 Rmu_sc0005344.1_g000001 Rmu_sc0006325.1_g000034 Rmu_sc0006838.1_g000007 Rmu_sc0006838.1_g000019 Rmu_sc0008490.1_g000023 Rmu_sc0008530.1_g000001 Rmu_sc0012743.1_g000005 Rmu_sc0013600.1_g000004 Rmu_sc0016890.1_g000002
rosa_roxburghii	Rroxscaffold_1G00012720 Rroxscaffold_1G00013420 Rroxscaffold_2G00083970 Rroxscaffold_2G00084070 Rroxscaffold_2G00084110 Rroxscaffold_2G00084170 Rroxscaffold_2G00084190 Rroxscaffold_2G00084200 Rroxscaffold_2G00084210 Rroxscaffold_2G00084530 Rroxscaffold_2G00084540 Rroxscaffold_2G00129390 Rroxscaffold_2G00129510 Rroxscaffold_4G00327620 Rroxscaffold_4G00328190 Rroxscaffold_5G00340960 Rroxscaffold_5G00340970 Rroxscaffold_7G00187900
rosa_rugosa	Rorug02G0186300 Rorug02G0186300 Rorug02G0186400 Rorug02G0525600 Rorug02G0525700 Rorug05G0573300 Rorug06G0132500
rosa_samantha	Rh1CG075200 Rh1DG027600 Rh2AG240700 Rh2AG240800 Rh2AG591700 Rh2AG591900 Rh2AG592200 Rh2AG592300 Rh2AG592400 Rh2AG592600 Rh2AG592700 Rh2AG641300 Rh2BG254400 Rh2BG254700 Rh2BG254800 Rh2BG603800 Rh2CG244800 Rh2CG244900 Rh2DG248700 Rh2DG248800 Rh2DG614700 Rh2DG614800 Rh2DG614900 Rh2DG615100 Rh2DG615400 Rh2DG615500 Rh2DG615700 Rh2DG668300 Rh5AG445300 Rh5DG375200 Rh5DG476800 Rh6BG082200 Rh6BG247400 Rh6CG249200
rosa_wichuraiana	Rw2G049330 Rw4G005360 Rw5G032950 Rw5G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	167, 183
AccII	CGCG	2 cut(s)	519, 600
AciI	CCGC	2 cut(s)	517, 542
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	4 cut(s)	473, 490, 511, 571
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	4 cut(s)	138, 170, 482, 514
AluBI	AGCT	2 cut(s)	263, 466
AluI	AGCT	2 cut(s)	263, 466
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	202, 390
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	351
AvaII	GGWCC	2 cut(s)	202, 390
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	4 cut(s)	193, 244, 363, 517
BceAI	ACGGC	2 cut(s)	28, 202
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	3 cut(s)	264, 517, 543
BlsI	GCNGC	3 cut(s)	265, 518, 544
Bme1390I	CCNGG	2 cut(s)	428, 619
Bme18I	GGWCC	2 cut(s)	202, 390
BmgT120I	GGNCC	2 cut(s)	202, 390
BmrFI	CCNGG	2 cut(s)	428, 619
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	619
BsaBI	GATNNNNATC	2 cut(s)	254, 510
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	65, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	254, 510
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	65, 427
BseGI	GGATG	2 cut(s)	348, 374
BseJI	GATNNNNATC	2 cut(s)	254, 510
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	2 cut(s)	519, 600
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	289, 579
BspACI	CCGC	2 cut(s)	517, 542
BspANI	GGCC	1 cut(s)	15
BspFNI	CGCG	2 cut(s)	519, 600
BsrDI	GCAATG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	65, 427
BssMI	GATC	2 cut(s)	289, 579
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	181, 193
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	93, 102, 268
BstDEI	CTNAG	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	348, 374
BstFNI	CGCG	2 cut(s)	519, 600
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	2 cut(s)	292, 582
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	289, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 101, 525
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	104, 225
BstSCI	CCNGG	2 cut(s)	426, 617
BstUI	CGCG	2 cut(s)	519, 600
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	348, 374
BtsIMutI	CAGTG	2 cut(s)	189, 648
Cac8I	GCNNGC	3 cut(s)	93, 102, 268
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	2 cut(s)	202, 390
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	101, 109, 222, 611
CviJI	RGCY	5 cut(s)	15, 263, 433, 466, 617
CviKI_1	RGCY	5 cut(s)	15, 263, 433, 466, 617
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	2 cut(s)	291, 581
DpnII	GATC	2 cut(s)	289, 579
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	202, 390
EcoRII	CCWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	4 cut(s)	104, 112, 225, 614
FaiI	YATR	9 cut(s)	80, 102, 110, 172, 174, 223, 285, 406, 612
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	4 cut(s)	100, 108, 221, 610
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	579
FblI	GTMKAC	2 cut(s)	167, 183
Fnu4HI	GCNGC	3 cut(s)	264, 517, 543
FokI	GGATG	2 cut(s)	335, 381
Fsp4HI	GCNGC	3 cut(s)	264, 517, 543
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	3 cut(s)	264, 517, 543
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	104, 112, 225, 614
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HinfI	GANTC	3 cut(s)	126, 255, 511
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	168, 184
Hpy188I	TCNGA	4 cut(s)	125, 294, 368, 564
Hpy188III	TCNNGA	5 cut(s)	158, 388, 412, 473, 586
Hpy8I	GTNNAC	2 cut(s)	168, 184
HpyCH4III	ACNGT	2 cut(s)	181, 193
HpyCH4V	TGCA	7 cut(s)	32, 100, 104, 176, 377, 455, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 101, 525
HpyF3I	CTNAG	1 cut(s)	130
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	104, 112, 225, 614
HspAI	GCGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	2 cut(s)	289, 579
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	2 cut(s)	291, 581
MboI	GATC	2 cut(s)	289, 579
MboII	GAAGA	5 cut(s)	299, 373, 376, 583, 665
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	3 cut(s)	303, 485, 537
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	152, 215, 320, 586
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	1 cut(s)	664
MslI	CAYNNNNRTG	2 cut(s)	194, 367
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	2 cut(s)	428, 619
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	2 cut(s)	519, 600
MwoI	GCNNNNNNNGC	3 cut(s)	97, 101, 525
NciI	CCSGG	1 cut(s)	619
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	289, 579
NlaIII	CATG	4 cut(s)	104, 112, 225, 614
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	2 cut(s)	104, 225
PaeI	GCATGC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	255, 511
PkrI	GCNGC	3 cut(s)	265, 518, 544
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	2 cut(s)	202, 390
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	2 cut(s)	194, 367
SaqAI	TTAA	1 cut(s)	664
SatI	GCNGC	3 cut(s)	264, 517, 543
Sau3AI	GATC	2 cut(s)	289, 579
Sau96I	GGNCC	2 cut(s)	202, 390
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	428, 619
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	207, 265, 398, 402, 468, 579, 661
SinI	GGWCC	2 cut(s)	202, 390
SmiMI	CAYNNNNRTG	2 cut(s)	194, 367
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	3 cut(s)	303, 485, 537
SsiI	CCGC	2 cut(s)	517, 542
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	426, 617
TaaI	ACNGT	2 cut(s)	181, 193
TasI	AATT	3 cut(s)	303, 485, 537
TauI	GCSGC	2 cut(s)	519, 545
TfiI	GAWTC	2 cut(s)	255, 511
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	2 cut(s)	196, 655
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	4 cut(s)	97, 300, 311, 627
TspGWI	ACGGA	2 cut(s)	55, 319
TspRI	CASTG	2 cut(s)	196, 655
VpaK11BI	GGWCC	2 cut(s)	202, 390
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	2 cut(s)	104, 225
XmiI	GTMKAC	2 cut(s)	167, 183
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.